Package fork.lib.bio.anno.genomic

Examples of fork.lib.bio.anno.genomic.BedGraphExporter.param()

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        }
    }
   
   
    BedGraphExporter be =new BedGraphExporter(lb);
    be.param().tit= FileName.getBaseName(out);
    be.writeToFile(out);
}
   
   
}
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    Distribution dnz= lb.getDistributionNonZero();
    double nf= dnz.sum()/ 100000000;
    new LandscapeTransformer(lb).divideBy(nf);
    BedGraphExporter be= new BedGraphExporter(lb);
    be.param().tit= tit;
    be.writeToFile(f);
}
   
   
   
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}

protected void write(ArrayList<String> ids, ArrayList<Double> vs, File f,String std, String tag)throws Exception{
    ProbeMapperStrand pp= new ProbeMapperStrand(anno, probe, std);
    BedGraphExporter be= new BedGraphExporter(pp.toLandscapeBuilder(ids, vs));
    be.param().tit= tag+"_"+std;
    be.writeToFile(f);
}


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        }
    }
   
   
    BedGraphExporter be =new BedGraphExporter(lb);
    be.param().tit= FileName.getBaseName(out);
    be.writeToFile(out);
}
   
   
}
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            }
        }
    }
   
    BedGraphExporter be= new BedGraphExporter(lbout);
    be.param().tit= FileName.getBaseName(out);
    be.writeToFile(out);
}
   
   
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                    }
                }
            }
        }
    };
    be.param().tit= tit;
    be.writeToFile(of);
}
   

public static void toRatio(File f, File ref, File out) throws Exception{
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