Examples of edu.stanford.bmir.protege.web.server.owlapi.OWLAPIProject.applyChanges()

Package edu.stanford.bmir.protege.web.server.owlapi

Class edu.stanford.bmir.protege.web.server.owlapi.OWLAPIProject

Examples of edu.stanford.bmir.protege.web.server.owlapi.OWLAPIProject.applyChanges()

edu.stanford.bmir.protege.web.server.owlapi.OWLAPIProject.applyChanges()
Applies a list of changes to ontologies in this project. @param userId The userId of the user applying the changes. Not {@code null}. @param changes The list of changes to be applied. Not {@code null}. @param changeDescription A description of the changes. Not {@code null}. @return A {@link ChangeApplicationResult} that describes the changes which took place an any renaminings. @throws NullPointerException if any parameters are {@code null}. @deprecated Use {@link #applyChanges(edu.stanford.bmir.protege.web.shared.user.UserId,edu.stanford.bmir.protege.web.server.change.ChangeListGenerator,ChangeDescriptionGenerator)}

            description.append("Set term namespace to ");
            description.append(termId.getNamespace());
        }
        if (!changes.isEmpty()) {
            UserId userId = getUserInSessionAndEnsureSignedIn();
            project.applyChanges(userId, changes, description.toString().trim());
        }
    }


    public List<OBOXRef> getXRefs(ProjectId projectId, OWLEntity term) {
        OWLAPIProject project = getProject(projectId);

View Full Code Here

        for (OWLAnnotation annotation : annotations) {
            OWLDataFactory df = project.getDataFactory();
            changes.add(new AddAxiom(rootOntology, df.getOWLAnnotationAssertionAxiom(subject, annotation)));
        }


        project.applyChanges(getUserInSessionAndEnsureSignedIn(), changes, "Set XRefs");


    }


    private String getStringAnnotationValue(ProjectId projectId, org.semanticweb.owlapi.model.IRI annotationSubject, org.semanticweb.owlapi.model.IRI annotationPropertyIRI, String defaultValue) {
        OWLAPIProject project = getProject(projectId);

View Full Code Here

        if (changes.isEmpty()) {
            // New
            changes.add(new AddAxiom(ont, definitionAssertion));
        }
        UserId userId = getUserInSessionAndEnsureSignedIn();
        project.applyChanges(userId, changes, "Set term definition");
    }


    private Set<OWLAnnotation> getAxiomAnnotationsExcludingXRefs(OWLAnnotationAssertionAxiom existingAx) {
        Set<OWLAnnotation> annotationsToCopy = new HashSet<OWLAnnotation>();
        for (OWLAnnotation existingAnnotation : existingAx.getAnnotations()) {

View Full Code Here

            OWLAnnotationAssertionAxiom synonymAnnotationAssertion = df.getOWLAnnotationAssertionAxiom(synonymProperty, subject, synonymNameLiteral, synonymXRefs);
            changes.add(new AddAxiom(rootOntology, synonymAnnotationAssertion));
        }




        project.applyChanges(getUserInSessionAndEnsureSignedIn(), changes, "Set synonym");
    }


    public OWLAnnotationProperty getSynonymAnnoationProperty(OWLDataFactory df, OBOTermSynonymScope scope) {
        switch (scope) {
            case EXACT:

View Full Code Here

        }




        if (!changes.isEmpty()) {
            UserId userId = getUserInSessionAndEnsureSignedIn();
            project.applyChanges(userId, changes, "Edited relationship values: " + description.toString());
        }


    }


    private OWLObjectSomeValuesFrom toSomeValuesFrom(OWLDataFactory dataFactory, OBORelationship relationship) {

View Full Code Here

        List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
        changes.add(new AddAxiom(rootOntology, newXPAxiom));
        if (existingXPAxiom != null) {
            changes.add(new RemoveAxiom(rootOntology, existingXPAxiom));
        }
        project.applyChanges(userId, changes, "Set cross product values");


    }


    private OWLClass toOWLClass(OWLDataFactory dataFactory, OWLClass cls) {
        return dataFactory.getOWLClass(cls.getIRI());

View Full Code Here

TOP

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.