Package edu.pitt.dbmi.nlp.noble.terminology

Examples of edu.pitt.dbmi.nlp.noble.terminology.Concept.clone()

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          c.setInitialized(true);
        }else{
          c = new Concept(code,term);
        }
        // clone
        c = c.clone();
        c.setTerminology(this);
        c.addMatchedTerm(oterm);
        c.setSearchString(text);
       
        if(ignoreAcronyms && isAcronym(c))
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        String cls_str = storage.getRegexMap().get(re);
        String txt = m.group(1);    // THIS BETTER BE THERE,
        //System.out.println(cls_str+" "+txt+" for re: "+re); 
        // create concept from class
        Concept c = convertConcept(storage.getConceptMap().get(cls_str));
        c = c.clone();
        c.setSearchString(term);
        Annotation.addAnnotation(c, txt,m.start());
       
        // check if results already have similar entry
        // if new entry is better replace the old one
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          c.setInitialized(true);
        }else{
          c = new Concept(code,term);
        }
        // clone
        c = c.clone();
        c.setTerminology(this);
        c.addMatchedTerm(oterm);
        c.setSearchString(text);
       
        if(ignoreAcronyms && isAcronym(c))
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