Package com.affymetrix.genoviz.widget.tieredmap

Examples of com.affymetrix.genoviz.widget.tieredmap.MapTierGlyph.addChild()

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        ExpandedTierPacker epack = (ExpandedTierPacker) sumTier.getExpandedPacker();
        epack.setMoveType(ExpandedTierPacker.DOWN);
        GlyphSummarizer summer = new GlyphSummarizer(col_exon_summary);
        if (exonGlyphs.size() > 0) {
            GlyphI gl = summer.getSummaryGlyph(exonGlyphs);
            sumTier.addChild(gl);
        }
        seqmap.addTier(sumTier);
        seqmap.repack();

//        table_view.showProperties(new Properties[0]);
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        MutableSeqSymmetry annot2genome = new SimpleMutableSeqSymmetry();
        copyToMutable(mrna2genome, annot2genome);

        SeqUtils.transformSymmetry(annot2genome, path2view);
    GlyphI tGlyph = glyphifyExons(mrna2genome, annot2genome, childcount);
        tier.addChild(tGlyph);
    BioSeq mrna = SeqUtils.getOtherSpan(mrna2genome, mrna2genome.getSpan(gseq)).getBioSeq();
    displayAssociatedmRNAforTranscript(mrna, path2view, mrna2genome, tier, tGlyph);
    }

  /**
 
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