Package com.affymetrix.genoviz.glyph

Examples of com.affymetrix.genoviz.glyph.LineContainerGlyph.addChild()

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      // so let's put it in a list
      exonList.add(exon2genome);
      cglyph.setColor(col_ts);
      cglyph.setCoords(gSpan.getMin(), 0, gSpan.getLength(), 20);
      exonGlyphs.add(cglyph);
      tGlyph.addChild(cglyph);
      //  testing display of "exon segments" for transcripts that have
      //     base inserts relative to the genomic sequence
      //  haven't dealt with display of base deletions in transcript relative to genomic yet
      //  if exon is segmented by inserts, then it will have children
      //     that specify this segmentation
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        if (seg_gspan.getLength() == 0) {
          // only mark the inserts (those whose genomic extent is zero
          GlyphI segGlyph = new OutlineRectGlyph();
          segGlyph.setColor(col_bg);
          segGlyph.setCoords(seg_gspan.getMin(), 0, seg_gspan.getLength(), 25);
          tGlyph.addChild(segGlyph);
        }
      }
    }
    return tGlyph;
  }
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        if(interpro != null){
          spanno += interpro;
        }
        cglyph.setText(spanno);
                cglyph.setCoords(gSpan.getMin(), 0, gSpan.getLength(), 20);
                aGlyph.addChild(cglyph);
                seqmap.setDataModel(cglyph, original_child);
                original_child.setProperty("type", "protspan");
            }
        }
        tier.addChild(aGlyph);
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