Examples of com.affymetrix.genometryImpl.symmetry.TypeContainerAnnot.addChild()


        // sorting exons, so that later position calculations are accurate


        Collections.sort(exon_list, new SeqSymStartComparator( genomic, forward));
        for (SeqSymmetry esym : exon_list) {
            m2gSym.addChild(esym);
        }


    BioSeq mrna = addSpans(m2gSym, genomic, exon_insert_list, start);
    
    String protein_id = determineProteinID(children);

            if (child instanceof Element) {
                Element chelem = (Element) child;
                if (name.equalsIgnoreCase("simspan")) {
                    SeqSymmetry spanSym = processSimSpan(query_seq, chelem);
                    ((SymWithProps) spanSym).setProperty(METHODSTR, method);
                    hitSym.addChild(spanSym);
                    SeqSpan spanSpan = spanSym.getSpan(query_seq);
                    if (hitSpan == null) {
                        hitSpan = new SimpleMutableSeqSpan(spanSpan.getMin(), spanSpan.getMax(), query_seq); 
                    } else {
                        SeqUtils.encompass(hitSpan, spanSpan, (MutableSeqSpan) hitSpan);

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