Package argparser

Examples of argparser.ArgParser.addOption()


                        svgFile = new StringHolder(),
                        simFile = new StringHolder(),
                        profFile = new StringHolder();
    
        // create the parser and specify the allowed options ...
        parser.addOption("--version,-v %v #show VennMaster version", versionOpt);
        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
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                        simFile = new StringHolder(),
                        profFile = new StringHolder();
    
        // create the parser and specify the allowed options ...
        parser.addOption("--version,-v %v #show VennMaster version", versionOpt);
        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
View Full Code Here

                        profFile = new StringHolder();
    
        // create the parser and specify the allowed options ...
        parser.addOption("--version,-v %v #show VennMaster version", versionOpt);
        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
View Full Code Here

    
        // create the parser and specify the allowed options ...
        parser.addOption("--version,-v %v #show VennMaster version", versionOpt);
        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
View Full Code Here

        // create the parser and specify the allowed options ...
        parser.addOption("--version,-v %v #show VennMaster version", versionOpt);
        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
        parser.addOption("--optstate %s #output of the optimizer state",optStateFile);
View Full Code Here

        parser.addOption("--version,-v %v #show VennMaster version", versionOpt);
        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
        parser.addOption("--optstate %s #output of the optimizer state",optStateFile);
        parser.addOption("--svg %s #generates an SVG file of the Venn diagram", svgFile);
View Full Code Here

        parser.addOption("--cfg %s #input configuration file", configFile);
        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
        parser.addOption("--optstate %s #output of the optimizer state",optStateFile);
        parser.addOption("--svg %s #generates an SVG file of the Venn diagram", svgFile);
        parser.addOption("--sim %s #output of the simulation profile",simFile);
View Full Code Here

        parser.addOption("--ocfg %s #output configuration file", outConfigFile);
        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
        parser.addOption("--optstate %s #output of the optimizer state",optStateFile);
        parser.addOption("--svg %s #generates an SVG file of the Venn diagram", svgFile);
        parser.addOption("--sim %s #output of the simulation profile",simFile);
        parser.addOption("--prof %s #output of the final error profile",profFile);
View Full Code Here

        parser.addOption("--list %s #list input file", listFile);
        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
        parser.addOption("--optstate %s #output of the optimizer state",optStateFile);
        parser.addOption("--svg %s #generates an SVG file of the Venn diagram", svgFile);
        parser.addOption("--sim %s #output of the simulation profile",simFile);
        parser.addOption("--prof %s #output of the final error profile",profFile);
       
View Full Code Here

        parser.addOption("--gce %s #GoMiner gene-category export file", gceFile);
        parser.addOption("--se %s #GoMiner summary export file", seFile);
        parser.addOption("--htgce %s #High-Throughput GoMiner gce file", htGceFile);
        parser.addOption("--filter %s #gene filter for GoMinor import.", filterFile);
        parser.addOption("--ofilter %s #output filter file", outFilterFile);
        parser.addOption("--optstate %s #output of the optimizer state",optStateFile);
        parser.addOption("--svg %s #generates an SVG file of the Venn diagram", svgFile);
        parser.addOption("--sim %s #output of the simulation profile",simFile);
        parser.addOption("--prof %s #output of the final error profile",profFile);
       
        parser.matchAllArgs(args);
View Full Code Here

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