Package uk.ac.ebi.fgpt.conan.utils

Examples of uk.ac.ebi.fgpt.conan.utils.ProcessRunner

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  public boolean execute(Map<ConanParameter, String> parameters) throws ProcessExecutionException, IllegalArgumentException, InterruptedException {
    getLog().info("Executing " + getName() + " with the following parameters: " + parameters.toString());
    String command = "gzip -" + parameters.get(compressionParameter) + " " + parameters.get(fileParameter);
    try {
      getLog().info("Issuing command: [" + command + "]");
      ProcessRunner runner = new ProcessRunner();
      runner.redirectStderr(true);
      String[] output = runner.runCommmand(command);
      if (output.length > 0) {
          getLog().info("Response from command [" + command + "]: " +
                                 output.length + " lines, first line was " + output[0]);
      }
    }
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  public boolean execute(Map<ConanParameter, String> parameters) throws ProcessExecutionException, IllegalArgumentException, InterruptedException {
    getLog().info("Executing " + getName() + " with the following parameters: " + parameters.toString());
    String command = "gunzip " + parameters.get(fileParameter);
    try {
      getLog().info("Issuing command: [" + command + "]");
      ProcessRunner runner = new ProcessRunner();
      runner.redirectStderr(true);
      String[] output = runner.runCommmand(command);
      if (output.length > 0) {
          getLog().info("Response from command [" + command + "]: " +
                                 output.length + " lines, first line was " + output[0]);
      }
    }
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Related Classes of uk.ac.ebi.fgpt.conan.utils.ProcessRunner

  • uk.ac.bbsrc.tgac.miso.analysis.tgac.test.process.LocalGunzipProcess
  • uk.ac.bbsrc.tgac.miso.analysis.tgac.test.process.LocalGzipProcess
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