Package uk.ac.bbsrc.tgac.miso.analysis.parameter

Examples of uk.ac.bbsrc.tgac.miso.analysis.parameter.PathCreatingPathParameter

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  private final Collection<ConanParameter> parameters;
  private final PathCreatingPathParameter fileParameter;
  private final FlagParameter compressionParameter;

  public LocalGzipProcess() {
    fileParameter = new PathCreatingPathParameter("file");
    compressionParameter = new FlagParameter("compression");

    parameters = new ArrayList<ConanParameter>();
    parameters.add(fileParameter);
    parameters.add(compressionParameter);
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  private final Collection<ConanParameter> parameters;
  private final PathCreatingPathParameter fileParameter;

  public LocalGunzipProcess() {
    fileParameter = new PathCreatingPathParameter("file");

    parameters = new ArrayList<ConanParameter>();
    parameters.add(fileParameter);
  }
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    setQueueName("lsf_testing");

    // set this to your own bsub path!
    setBsubPath("/path/to/bsub");

    fileParameter = new PathCreatingPathParameter("file");
    compressionParameter = new FlagParameter("compression");

    parameters = new ArrayList<ConanParameter>();
    parameters.add(fileParameter);
    parameters.add(compressionParameter);
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Related Classes of uk.ac.bbsrc.tgac.miso.analysis.parameter.PathCreatingPathParameter

  • uk.ac.bbsrc.tgac.miso.analysis.process.LsfGzipProcess
  • uk.ac.bbsrc.tgac.miso.analysis.tgac.test.process.LocalGunzipProcess
  • uk.ac.bbsrc.tgac.miso.analysis.tgac.test.process.LocalGzipProcess
  • java.io.File
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