Examples of stallone.api.datasequence.IDataSequenceLoader

stallone.api.datasequence.IDataSequenceLoader
Interface for loaders that retrieve DataSequences (e.g. trajectories) from file systems or data bases. Shields the usage of this data from the file / database access in order to efficiently deal with slow loading times, while at the same time keeping the memory and file handle usage low. @author noe

        System.out.println("Input shape = "+N+" x "+d);*/
        List<String> names = new ArrayList();
        names.add("/Users/noe/data/open_projects/adaptive_sampling_local/data/TrypsinBenzamidine/new_model_test/model/tics/long1.dat");
        names.add("/Users/noe/data/open_projects/adaptive_sampling_local/data/TrypsinBenzamidine/new_model_test/model/tics/long2.dat");
        names.add("/Users/noe/data/open_projects/adaptive_sampling_local/data/TrypsinBenzamidine/new_model_test/model/tics/long3.dat");
        IDataSequenceLoader loader = dataNew.multiSequenceLoader(names);
        loader.scan();
        
        IClustering clustering = clusterNew.regspace(loader, 0.5);
        clustering.perform();
        
        /*

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        String[] ifiles = parser.getStringArray("idata");
        inputFiles = new ArrayList();
        for (int i=0; i<ifiles.length; i++)
            inputFiles.add(ifiles[i]);
        
        IDataSequenceLoader loader = dataNew.multiSequenceLoader(inputFiles);
        data = intseq.loadIntSequences(inputFiles);
        for (int i=0; i<data.size(); i++)
        {
            dataMaxTime = Math.max(dataMaxTime, data.get(i).size());
            nObservableStates = Math.max(nObservableStates, ints.max(data.get(i))+1);

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        String[] ifiles = parser.getStringArray("i");
        inputFiles = new ArrayList();
        for (int i=0; i<ifiles.length; i++)
            inputFiles.add(ifiles[i]);
        
        IDataSequenceLoader loader = dataNew.multiSequenceLoader(inputFiles);
        data = loader.loadAll();


        nclusters = parser.getInt("ncluster");
        nsplit = parser.getInt("nsplit");
        
        outPrefix = parser.getString("o");

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Related Classes of stallone.api.datasequence.IDataSequenceLoader

stallone.hmm.pmm.MultiClusteringKmeans

stallone.hmm.pmm.Validation

stallone.ui.Test

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