}
this.outputRange = this.outputRangesIterator.next();
// init
this.alleleCoverageCutoffs = new AlleleCoverageCutoffs(MINIMUM_ALLELE_COVERAGE, MINIMUM_ALLELE_PROBABILITY, QUIET_STDERR);
this.toOutputQueue = new PriorityQueue<AlignRecord>(40, new AlignRecordComparator());
this.InsertSizeRangeSet();
while(this.inputRangesIterator.hasNext()) {
Range inputRange = this.inputRangesIterator.next();