Examples of ru.autosome.commons.backgroundModel.mono.Background


    List<Double> tokens = InputExtensions.listOfDoubleTokens(s);
    if (tokens.size() == 16) {
      return new DiBackground(ArrayExtensions.toPrimitiveArray(tokens));
    } else if (tokens.size() == 4) {
      BackgroundModel monoBackground = new Background(tokens);
      return DiBackground.fromMonoBackground( monoBackground );
    } else if (tokens.size() == 1) {
      return DiBackground.fromGCContent(tokens.get(0));
    } else {
      throw new IllegalArgumentException("Background string `" + s + "` not recognized.\n" +

    System.out.println(dipwm.score(word));


    //DiPWM dipwm_2 = new DiPWMImporter().loadMotif("test_data/dipwm/AP2A.di"));


    run_mono_and_di(pwm, new WordwiseBackground(), discretizer, max_hash_size, threshold);
    run_mono_and_di(pwm, new Background(new double[] {0.1, 0.4, 0.4, 0.1}), discretizer, max_hash_size, threshold);
    run_mono_and_di(pwm, new Background(new double[] {0.25, 0.25, 0.25, 0.25}), discretizer, max_hash_size, threshold);
  }

Related Classes of ru.autosome.commons.backgroundModel.mono.Background

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