Examples of ru.autosome.commons.backgroundModel.di.DiBackgroundModel

      //System.out.println("\n----------\n" + new PairAligned(firstPWMCounting, secondPWMCounting, similarityInfo.alignment).firstModelAligned);
      //System.out.println("\n----------\n" + new PairAligned(firstPWMCounting, secondPWMCounting, similarityInfo.alignment).secondModelAligned);


      DiPWM firstDiPWM = DiPWM.fromPWM(firstPWM);
      DiPWM secondDiPWM = DiPWM.fromPWM(secondPWM);
      DiBackgroundModel dibackground = new DiWordwiseBackground();
//      DiBackgroundModel dibackground = new DiBackground(new double[]{ 0.0625,0.0625,0.0625,0.0625,
//                                                                      0.0625,0.0625,0.0625,0.0625,
//                                                                      0.0625,0.0625,0.0625,0.0625,
//                                                                      0.0625,0.0625,0.0625,0.0625});
      ru.autosome.macroape.calculation.di.CompareModels dicomparator;

                         "number of recognized words: " + info.numberOfRecognizedWords(background, pwmLength) + "\n------------\n");
  }


  static void run_mono_and_di(PWM mono_pwm, BackgroundModel mono_background, Discretizer discretizer, Integer max_hash_size, double threshold) {
    DiPWM di_pwm = DiPWM.fromPWM(mono_pwm);
    DiBackgroundModel di_background = DiBackground.fromMonoBackground(mono_background);


    FindPvalueAPE calculator = new FindPvalueAPE<PWM, BackgroundModel>(mono_pwm,
                                                                       mono_background,
                                                                       discretizer, max_hash_size);
    FindPvalueAPE dicalculator = new FindPvalueAPE<DiPWM, DiBackgroundModel>(di_pwm,

Related Classes of ru.autosome.commons.backgroundModel.di.DiBackgroundModel

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