Package ru.autosome.ape.model.exception

Examples of ru.autosome.ape.model.exception.HashOverflowException

38
39
40
41
42
43
44
45
46
47
48
  protected ScoreDistributionTop score_distribution_above_threshold(double threshold) throws HashOverflowException {
    TDoubleDoubleMap scores = initialCountDistribution();
    for (int pos = 0; pos < pwm.length(); ++pos) {
      scores = recalc_score_hash(scores, pwm.matrix[pos], threshold - pwm.best_suffix(pos + 1));
      if (exceedHashSizeLimit(scores)) {
        throw new HashOverflowException("Hash overflow in PWM::ThresholdByPvalue#score_distribution_above_threshold");
      }
    }
    ScoreDistributionTop result = new ScoreDistributionTop(scores, vocabularyVolume(), threshold);
    result.setWorstScore(pwm.worst_score());
    result.setBestScore(pwm.best_score());
View Full Code Here
90
91
92
93
94
95
96
97
98
99
100
                                 firstColumn, secondColumn,
                                 leastSufficientScoresFirst, leastSufficientScoresSecond,
                                 background);

      if (maxPairHashSize != null && summarySize(scores) > maxPairHashSize) {
        throw new HashOverflowException("Hash overflow in AlignedModelIntersection#get_counts");
      }
    }

    return combine_scores(scores);
  }
View Full Code Here
46
47
48
49
50
51
52
53
54
55
56
      for (int letter = 0; letter < 4; ++letter) {
        least_sufficient[letter] = threshold - dipwm.best_suffix(column + 1, letter);
      }
      scores = recalc_score_hash(scores, dipwm.matrix[column], least_sufficient);
      if (exceedHashSizeLimit(scores)) {
        throw new HashOverflowException("Hash overflow in DiPWM::ThresholdByPvalue#score_distribution_above_threshold");
      }
    }

    TDoubleDoubleMap score_count_hash = combine_scores(scores);
    ScoreDistributionTop result = new ScoreDistributionTop(score_count_hash, vocabularyVolume(), threshold);
View Full Code Here
64
65
66
67
68
69
70
71
72
73
74
                                   leastSufficientScoreFirst, leastSufficientScoreSecond,
                                   background);
      }

      if (maxPairHashSize != null && summarySize(scores) > maxPairHashSize) {
        throw new HashOverflowException("Hash overflow in AlignedModelIntersection#get_counts");
      }
    }

    return combine_scores(scores);
  }
View Full Code Here
TOP

Related Classes of ru.autosome.ape.model.exception.HashOverflowException

  • ru.autosome.macroape.calculation.di.AlignedModelIntersection
  • ru.autosome.macroape.calculation.mono.AlignedModelIntersection
  • ru.autosome.perfectosape.calculation.ScoringModelDistributions.CountingDiPWM
  • ru.autosome.perfectosape.calculation.ScoringModelDistributions.CountingPWM
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.