Package ru.autosome.ape.calculation.findThreshold

Examples of ru.autosome.ape.calculation.findThreshold.CanFindThresholdApproximation


  private ScoreDistributionTop score_distribution_under_pvalue(double pvalue) throws HashOverflowException {
    final int maxNumberOfAttempts = 2;
    int numberOfAttempts = 0;
    ScoreDistributionTop scoreDistribution;
    CanFindThresholdApproximation gaussianThresholdEstimation = gaussianThresholdEstimator();
    double pvalue_to_estimate_threshold = pvalue;
    try {
      do {
        numberOfAttempts += 1;
        if (numberOfAttempts > maxNumberOfAttempts) {
          return score_distribution(); // calculate whole distribution
        }
        // calculate only top part of distribution cause it's faster
        double approximate_threshold = gaussianThresholdEstimation.thresholdByPvalue(pvalue_to_estimate_threshold);
        scoreDistribution = score_distribution_above_threshold(approximate_threshold);
        pvalue_to_estimate_threshold *= 2;
      } while (scoreDistribution.top_part_pvalue() < pvalue);
      return scoreDistribution;

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Related Classes of ru.autosome.ape.calculation.findThreshold.CanFindThresholdApproximation

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