Package reaction

Examples of reaction.Reaction

50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
   
  }
 
  public Reaction getTranscriptionRxn()
  {
    Reaction ret = new Reaction();
   
    // POL + TEMPLATE
    ret.addReactant(cell, POL, 1, 1);
    ret.addReactant(cell, TEMPLATE, 1, 1);
   
    // ---> POL + TEMPLATE + Nt
    ret.addProduct(cell, POL, (1 - alphaLtNt), tNt);
    ret.addProduct(cell, POL, alphaLtNt, tPOLt);
    ret.addProduct(cell, TEMPLATE, 1, polDelay);
    ret.addProduct(cell, Nt, 1, tNt);
    ret.addProduct(cell, POLt, alphaLtNt, tPOLt);
   
    // K
    ret.setk(1258 * 1000 * kReplication);
   
    return ret;
  }
View Full Code Here
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
    return ret;
  }
 
  public Reaction getNtRxn()
  {
    Reaction ret = new Reaction();
   
    // POL + TEMPLATE
    ret.addReactant(cell, RIB, 1, 1);
    ret.addReactant(cell, Nt, 1, 1);
   
    // ---> POL + TEMPLATE + Nt
    ret.addProduct(cell, RIB, 1, tNp);
    ret.addProduct(cell, Nt, 1, ribDelay);
    ret.addProduct(cell, N, 1, tNp);
   
    // K
    ret.setk(kTranslation);
   
    return ret;
  }
View Full Code Here
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
    return ret;
  }
 
  public Reaction getPOLtRxn()
  {
    Reaction ret = new Reaction();
   
    // POL + TEMPLATE
    ret.addReactant(cell, RIB, 1, 1);
    ret.addReactant(cell, POLt, 1, 1);
   
    // ---> POL + TEMPLATE + Nt
    ret.addProduct(cell, RIB, 1, tPOLp);
    ret.addProduct(cell, POLt, 1, ribDelay);
    ret.addProduct(cell, POL, 1, tPOLp);
   
    // K
    ret.setk(kTranslation);
   
    return ret;
  }
View Full Code Here
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
    return ret;
  }
 
  public Reaction getTemplateRxn()
  {
    Reaction ret = new Reaction();
   
    // POL + TEMPLATE
    ret.addReactant(cell, POL, 1, 1);
    ret.addReactant(cell, TEMPLATE, 1, 1);
    ret.addReactant(cell, N, 1258, 1);
   
    // ---> POL + TEMPLATE + NmRNA
    ret.addProduct(cell, POL, 1, tPOLt);
    ret.addProduct(cell, TEMPLATE, 1, polDelay);
    ret.addProduct(cell, rTEMPLATE, 1, tPOLt);
   
    // K
    ret.setk(kReplication);
   
    return ret;
  }
View Full Code Here
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
    return ret;
  }
 
  public Reaction getrTemplateRxn()
  {
    Reaction ret = new Reaction();
   
    // POL + TEMPLATE
    ret.addReactant(cell, POL, 1, 1);
    ret.addReactant(cell, rTEMPLATE, 1, 1);
    ret.addReactant(cell, N, 1258, 1);
   
    // ---> POL + TEMPLATE + NmRNA
    ret.addProduct(cell, POL, 1, tPOLt);
    ret.addProduct(cell, rTEMPLATE, 1, polDelay);
    ret.addProduct(cell, TEMPLATE, 1, tPOLt);
   
    // K
    ret.setk(kReplication);
   
    return ret;
  }
View Full Code Here
TOP

Related Classes of reaction.Reaction

  • miscellaneous.CSVList
  • miscellaneous.LSVList
  • simulation.SimplifiedModel
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.