Package picard.vcf.GenotypeConcordanceStates

Examples of picard.vcf.GenotypeConcordanceStates.CallState


            final Allele truthAllele1 = (Allele) unitTestData[0];
            final Allele truthAllele2 = (Allele) unitTestData[1];
            final TruthState expectedTruthState = (TruthState) unitTestData[2];
            final Allele callAllele1 = (Allele) unitTestData[3];
            final Allele callAllele2 = (Allele) unitTestData[4];
            final CallState expectedCallState = (CallState) unitTestData[5];
            if (!callAllele1.equals(callAllele2)) {
                allPermutationUnitTestDataList.add(new Object[]{truthAllele1, truthAllele2, expectedTruthState, callAllele2, callAllele1, expectedCallState});
            }
            if (!truthAllele1.equals(truthAllele2)) {
                allPermutationUnitTestDataList.add(new Object[]{truthAllele2, truthAllele1, expectedTruthState, callAllele1, callAllele2, expectedCallState});
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