Examples of org.wymiwyg.rdf.molecules.Molecule

org.wymiwyg.rdf.molecules.Molecule
A set of triples that cannot be decomposed without reducing its meaning. A Molecule is not necessarly a Graph, as the identity may be determined by the id of b-nodes, this is in a model-referencing decomposition @author reto

    }


    out.println("Maximum contextual molecules only in 1: " + contextualMoleculesOnlyIn1.size());
    for (Iterator<MaximumContextualMolecule> iter = contextualMoleculesOnlyIn1.iterator(); iter
        .hasNext();) {
      Molecule current = iter.next();
      out.print("-");
      out.println(current);
    }
    out.println("Maximum contextual molecules only in 2: " + contextualMoleculesOnlyIn2.size());
    for (Iterator<MaximumContextualMolecule> iter = contextualMoleculesOnlyIn2.iterator(); iter
        .hasNext();) {
      Molecule current = iter.next();
      out.print("-");
      out.println(current);
    }
    out.println("Terminal molecules only in 1: " + terminalMoleculesOnlyIn1.size());
    for (Iterator<TerminalMolecule> iter = terminalMoleculesOnlyIn1.iterator(); iter
        .hasNext();) {
      Molecule current = iter.next();
      out.print("-");
      out.println(current);
    }
    out.println("Terminal molecules only in 2: " + terminalMoleculesOnlyIn2.size());
    for (Iterator<TerminalMolecule> iter = terminalMoleculesOnlyIn2.iterator(); iter
        .hasNext();) {
      Molecule current = iter.next();
      out.print("-");
      out.println(current);
    }
  }

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    Collection<Molecule> moleculeSet = new HashSet<Molecule>(refDec
        .getContextualMolecules());
    moleculeSet.addAll(refDec.getTerminalMolecules());
    System.out.println("Total molecules: " + moleculeSet.size());
    for (Iterator iter = moleculeSet.iterator(); iter.hasNext();) {
      Molecule current = (Molecule) iter.next();
      System.out.println(current.getClass() + ": " + current);
    }
    Molecule molecule1 = getSingleMolecule("molecule1.rdf");
    Molecule molecule2 = getSingleMolecule("molecule2.rdf");
    assertTrue("Molecule 1 contained", moleculeSet.contains(molecule1));
    assertTrue("Molecule 2 contained", moleculeSet.contains(molecule2));
    for (Iterator iter = moleculeSet.iterator(); iter.hasNext();) {
      Molecule current = (Molecule) iter.next();
      System.out.println("---------------- Molecule ("
          + current.getClass() + ") :");
      System.out.println(current);
    }
    assertEquals("contains 2 molecules", 3, moleculeSet.size());
  }

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      ZipOutputStream zipOut, String directoryName) throws IOException {
    int counter = 0;
    for (Iterator<? extends Molecule> iter = molecules.iterator(); iter
        .hasNext();) {
      counter++;
      Molecule current = iter.next();
      StringBuffer fileName = new StringBuffer(directoryName);
      fileName.append(modelLabel);
      /*
       * if (current instanceof ContextualMolecule) {
       * fileName.append("/contextual-"); } else

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    Model model2 = ModelFactory.createDefaultModel();
    createSameContextualMolecules(model1, model2);
    long startTime = System.currentTimeMillis();
    assertTrue("Jena isomorphism", model1.isIsomorphicWith(model2));
    System.out.println("Jena comparison took "+(System.currentTimeMillis()-startTime));
    Molecule molecule1 = getSingleMolecule(model1);
    Molecule molecule2 = getSingleMolecule(model2);
    startTime = System.currentTimeMillis();
    assertTrue("contextaul molecules equality",molecule1.equals(molecule2));
    System.out.println("Molecule comparison took "+(System.currentTimeMillis()-startTime));
  }

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    Model model2 = ModelFactory.createDefaultModel();
    Resource a2 = model2.createResource();
    Resource b2 = model2.createResource();
    a2.addProperty(RDFS.seeAlso, b2);
    b2.addProperty(RDFS.seeAlso, a2);
    Molecule molecule1 = getSingleMolecule(model1);
    Molecule molecule2 = getSingleMolecule(model2);
    assertTrue("jena-test", model1.isIsomorphicWith(model2));
    assertTrue("contextaul molecules equality",molecule1.equals(molecule2));
  }

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Related Classes of org.wymiwyg.rdf.molecules.Molecule

org.wymiwyg.rdf.molecules.diff.MoleculeDiffBase

org.wymiwyg.rdf.molecules.diff.serializer.RDFZipSerializer

org.wymiwyg.rdf.molecules.functref.test.ReferenceGroundedDecompositionTestBase

org.wymiwyg.rdf.molecules.test.ContextualIdentityTest

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