Examples of org.semanticweb.owlapi.expression.ShortFormEntityChecker

Package org.semanticweb.owlapi.expression

Examples of org.semanticweb.owlapi.expression.ShortFormEntityChecker

org.semanticweb.owlapi.expression.ShortFormEntityChecker
An entity checker that maps from string to entities using a bidirectional short form provider. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.2.0

        BidirectionalShortFormProvider shortFormProvider = new BidirectionalShortFormProviderAdapter(
                ontologies, sfp);
        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(expression);
        parser.setDefaultOntology(wine);
        parser.setOWLEntityChecker(new ShortFormEntityChecker(shortFormProvider));
        parser.parseClassExpression();
    }

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                Collections.<OWLAnnotationProperty, List<String>> emptyMap(), m);
        BidirectionalShortFormProvider shortFormProvider = new BidirectionalShortFormProviderAdapter(
                m.getOntologies(), sfp);
        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(text1);
        ShortFormEntityChecker owlEntityChecker = new ShortFormEntityChecker(
                shortFormProvider);
        parser.setOWLEntityChecker(owlEntityChecker);
        parser.setDefaultOntology(o);
        // when
        // finally parse

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                Collections.<OWLAnnotationProperty, List<String>> emptyMap(), m);
        BidirectionalShortFormProvider shortFormProvider = new BidirectionalShortFormProviderAdapter(
                m.getOntologies(), sfp);
        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(text1);
        ShortFormEntityChecker owlEntityChecker = new ShortFormEntityChecker(
                shortFormProvider);
        parser.setOWLEntityChecker(owlEntityChecker);
        parser.setDefaultOntology(o);
        // when
        // finally parse

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                Collections.<OWLAnnotationProperty, List<String>> emptyMap(), m);
        BidirectionalShortFormProvider shortFormProvider = new BidirectionalShortFormProviderAdapter(
                m.getOntologies(), sfp);
        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(text1);
        ShortFormEntityChecker owlEntityChecker = new ShortFormEntityChecker(
                shortFormProvider);
        parser.setOWLEntityChecker(owlEntityChecker);
        parser.setDefaultOntology(o);
        // when
        // finally parse

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                Collections.<OWLAnnotationProperty, List<String>> emptyMap(), m);
        BidirectionalShortFormProvider shortFormProvider = new BidirectionalShortFormProviderAdapter(
                m.getOntologies(), sfp);
        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(text1);
        ShortFormEntityChecker owlEntityChecker = new ShortFormEntityChecker(
                shortFormProvider);
        parser.setOWLEntityChecker(owlEntityChecker);
        parser.setDefaultOntology(o);
        // when
        // finally parse

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                Collections.<OWLAnnotationProperty, List<String>> emptyMap(), m);
        BidirectionalShortFormProvider shortFormProvider = new BidirectionalShortFormProviderAdapter(
                m.getOntologies(), sfp);
        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(in);
        ShortFormEntityChecker owlEntityChecker = new ShortFormEntityChecker(
                shortFormProvider);
        parser.setOWLEntityChecker(owlEntityChecker);
        parser.setDefaultOntology(o);
        // when
        // finally parse

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        ManchesterOWLSyntaxParser parser = OWLManager.createManchesterParser();
        parser.setStringToParse(classExpressionString);
        parser.setDefaultOntology(rootOntology);
        // Specify an entity checker that wil be used to check a class
        // expression contains the correct names.
        OWLEntityChecker entityChecker = new ShortFormEntityChecker(
                bidiShortFormProvider);
        parser.setOWLEntityChecker(entityChecker);
        // Do the actual parsing
        return parser.parseClassExpression();
    }

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        parser.setDefaultOntology(oldOntology);
        ShortFormProvider shortFormProvider = new SimpleShortFormProvider();
        Set<OWLOntology> importsClosure = oldOntology.getImportsClosure();
        BidirectionalShortFormProvider bidiShortFormProvider = new BidirectionalShortFormProviderAdapter(manager, importsClosure, shortFormProvider);
        // Specify an entity checker that wil be used to check a class expression contains the correct names.
        OWLEntityChecker entityChecker = new ShortFormEntityChecker(bidiShortFormProvider);
        parser.setOWLEntityChecker(entityChecker);


        OWLClassExpression classExp=null;
        try {
            classExp = parser.parseClassExpression();

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        if (auxiliaryOntologies != null && !auxiliaryOntologies.isEmpty()) {
            for (OWLOntology auxOnt : auxiliaryOntologies) {
                ontologies.addAll(auxOnt.getImportsClosure());
            }
        }
        ShortFormEntityChecker defaultInstance = new ShortFormEntityChecker(
                new BidirectionalShortFormProviderAdapter(manager, ontologies,
                        shortFormProvider));
        entityChecker = new AdvancedEntityChecker(defaultInstance, ontologies,
                inputOntology.getOWLOntologyManager());
    }

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