Examples of org.semanticweb.owl.util.SimpleURIMapper

org.semanticweb.owl.util.SimpleURIMapper
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 12-Dec-2006

          /* create the logical URI of the new Abox */
          URI newAboxURI = createNewURI(abox.getURI().toString(), rr.getRunNumber());
          /* create the physical URI of the new Abox */
          URI newAboxPhysicalURI = createNewURI(tmpAboxURI, rr.getRunNumber());
          /* Set up a mapping, which maps the ontology URI to the physical URI */
          SimpleURIMapper mapper = new SimpleURIMapper(newAboxURI, newAboxPhysicalURI);
          manager.addURIMapper(mapper);
          
          /* Create a new Abox to store the newly inferred instance relations and the Abox used in the current run */
          modifiedAbox = manager.createOntology(newAboxURI);
          manager.addAxioms(modifiedAbox, abox.getAxioms());

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  }
  
  private static void saveOntologyToFile(OWLOntology ontology, URI tboxPhysicalURI){
    OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
    /* Set up a mapping, which maps the ontology URI to the physical URI */
    SimpleURIMapper mapper = new SimpleURIMapper(ontology.getURI(), tboxPhysicalURI);
    manager.addURIMapper(mapper);
    try {
      manager.saveOntology(ontology, new RDFXMLOntologyFormat(), tboxPhysicalURI);
    } catch (UnknownOWLOntologyException e) {
      logger.equals("Couldn't save approximated Tbox to file ("+tboxPhysicalURI+")");

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        {
          URI newAboxURI = createURI(aboxOntology.getURI(), runResult
              .getRunNumber());
          URI newAboxPhysicalURI = createURI(tmpAboxURI, runResult
              .getRunNumber());
          SimpleURIMapper mapper = new SimpleURIMapper(newAboxURI,
              newAboxPhysicalURI);
          manager.addURIMapper(mapper);


          modifiedAboxOntology = manager.createOntology(newAboxURI);
          manager.addAxioms(modifiedAboxOntology, aboxOntology

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  }


  private void saveOntology(OWLOntology ontology, URI physicalURI)
  {
    OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
    SimpleURIMapper mapper = new SimpleURIMapper(ontology.getURI(),
        physicalURI);
    manager.addURIMapper(mapper);


    try
    {

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        //System.out.println("Debugging ontology: " + ontologyCounter);
        if (debuggingOntology != null) {
            owlOntologyManager.removeOntology(debuggingOntology.getURI());
        }
        URI uri = createURI();
        OWLOntologyURIMapper mapper = new SimpleURIMapper(uri, uri);
        owlOntologyManager.addURIMapper(mapper);
        debuggingOntology = owlOntologyManager.createOntology(uri);
        owlOntologyManager.removeURIMapper(mapper);
        List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
        for (OWLAxiom ax : debuggingAxioms) {

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    private void createDebuggingOntology() throws OWLException {
        if (debuggingOntology != null) {
            owlOntologyManager.removeOntology(debuggingOntology.getURI());
        }
        URI uri = createURI();
        OWLOntologyURIMapper mapper = new SimpleURIMapper(uri, uri);
        owlOntologyManager.addURIMapper(mapper);
        debuggingOntology = owlOntologyManager.createOntology(uri);
        owlOntologyManager.removeURIMapper(mapper);
        List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
        for (OWLAxiom ax : debuggingAxioms) {

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