manager.applyChanges( changes );
changes = new ArrayList<OWLOntologyChange>();
for( OWLEntity entity : referencedEntities ) {
if( !ontology.containsEntityReference( entity ) ) {
OWLDeclarationAxiom declaration = manager.getOWLDataFactory()
.getOWLDeclarationAxiom( entity );
changes.add( new AddAxiom( ontology, declaration ) );
}
}