Package org.semanticweb.binaryowl.owlapi

Examples of org.semanticweb.binaryowl.owlapi.BinaryOWLOntologyDocumentFormat

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    private synchronized void createEmptyProject(NewProjectSettings newProjectSettings) throws IOException {
        try {
            IRI ontologyIRI = createUniqueOntologyIRI();
            OWLOntologyManager rootOntologyManager = WebProtegeOWLManager.createOWLOntologyManager();
            OWLOntology ontology = rootOntologyManager.createOntology(ontologyIRI);
            rootOntologyManager.setOntologyFormat(ontology, new BinaryOWLOntologyDocumentFormat());
            saveNewProjectOntologyAndCreateNotesOntologyDocument(rootOntologyManager, ontology);
        } catch (OWLOntologyCreationException e) {
            logger.severe(e);
            throw new RuntimeException(e);
        } catch (OWLOntologyStorageException e) {
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                        .setMissingImportHandlingStrategy(MissingImportHandlingStrategy.SILENT);
                RawProjectSourcesImporter importer = new RawProjectSourcesImporter(rootOntologyManager, loaderConfig);
                OWLOntology ontology = importer.importRawProjectSources(projectSources);

                for (OWLOntology ont : rootOntologyManager.getOntologies()) {
                    rootOntologyManager.setOntologyFormat(ont, new BinaryOWLOntologyDocumentFormat());
                }
                saveNewProjectOntologyAndCreateNotesOntologyDocument(rootOntologyManager, ontology);
                deleteSourceFile(uploadedFile);
            }
            else {
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            OWLOntologyManager rootOntologyManager,
            OWLOntology ontology) throws
                                  OWLOntologyStorageException {
        File binaryDocumentFile = getBinaryOntologyDocumentFile();
        binaryDocumentFile.getParentFile().mkdirs();
        rootOntologyManager.saveOntology(ontology, new BinaryOWLOntologyDocumentFormat(),
                                         IRI.create(binaryDocumentFile));
        ImportsCacheManager cacheManager = new ImportsCacheManager(projectId);
        cacheManager.cacheImports(ontology);
    }
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            OWLOntologyManager notesOntologyManager = WebProtegeOWLManager.createOWLOntologyManager();
            notesOntology = notesOntologyManager.createOntology();
            IRI notesOntologyDocumentIRI = IRI.create(notesOntologyDocument);
            notesOntologyManager.setOntologyDocumentIRI(notesOntology, notesOntologyDocumentIRI);
            notesOntologyDocument.getParentFile().mkdirs();
            BinaryOWLOntologyDocumentFormat notesOntologyDocumentFormat = new BinaryOWLOntologyDocumentFormat();
            notesOntologyManager.saveOntology(notesOntology, notesOntologyDocumentFormat, notesOntologyDocumentIRI);
        }
        catch (OWLOntologyCreationException e) {
            throw new RuntimeException(e);
        }
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                BinaryOWLOntologyDocumentSerializer serializer = new BinaryOWLOntologyDocumentSerializer();
                serializer.appendOntologyChanges(notesOntologyDocument, new OntologyChangeDataList(infoList, System.currentTimeMillis()));
            }
            else {
                // Swap it over
                notesOntologyManager.saveOntology(notesOntology, new BinaryOWLOntologyDocumentFormat());
            }

        }
        catch (OWLOntologyStorageException e) {
            throw new RuntimeException(e);
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            final OWLDataFactory df = notesOntologyManager.getOWLDataFactory();
            notesOntologyManager.applyChange(new AddImport(notesOntology, df.getOWLImportsDeclaration(CHANGES_ONTOLOGY_IRI)));
            IRI notesOntologyDocumentIRI = IRI.create(notesOntologyDocument);
            notesOntologyManager.setOntologyDocumentIRI(notesOntology, notesOntologyDocumentIRI);
            notesOntologyDocument.getParentFile().mkdirs();
            BinaryOWLOntologyDocumentFormat notesOntologyDocumentFormat = new BinaryOWLOntologyDocumentFormat();
            notesOntologyManager.saveOntology(notesOntology, notesOntologyDocumentFormat, notesOntologyDocumentIRI);
        }
        catch (OWLOntologyCreationException e) {
            throw new RuntimeException(e);
        }
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                BinaryOWLOntologyDocumentSerializer serializer = new BinaryOWLOntologyDocumentSerializer();
                serializer.appendOntologyChanges(notesOntologyDocument, new OntologyChangeDataList(infoList, System.currentTimeMillis()));
            }
            else {
                // Swap it over
                notesOntologyManager.saveOntology(notesOntology, new BinaryOWLOntologyDocumentFormat());
            }

        }
        catch (OWLOntologyStorageException e) {
            throw new RuntimeException(e);
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    @Test
    public void shouldSaveOntologyToBinaryDocumentFile()
            throws OWLOntologyCreationException, OWLOntologyStorageException{
        OWLOntologyManager manager = WebProtegeOWLManager.createOWLOntologyManager();
        OWLOntology ontology = manager.createOntology();
        BinaryOWLOntologyDocumentFormat format = new BinaryOWLOntologyDocumentFormat();
        manager.saveOntology(ontology, format, IRI.create(ontologyDocumentFile));
    }
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Related Classes of org.semanticweb.binaryowl.owlapi.BinaryOWLOntologyDocumentFormat

  • edu.stanford.bmir.protege.web.server.manager.WebProtegeOntologyManagerSaveBinaryDocumentTestCase
  • edu.stanford.bmir.protege.web.server.notes.impl.NoteStoreNotesAPIImpl
  • edu.stanford.bmir.protege.web.server.notes.OWLAPINotesManagerNotesAPIImpl
  • edu.stanford.bmir.protege.web.server.owlapi.OWLAPIProjectDocumentStore
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