Examples of org.sbml.jsbml.util.filters.Filter

org.sbml.jsbml.util.filters.Filter
A filter is a general interface that allows to check an object for a certain property. An implementing class may check for the type of the object and then check some of its field values. @author Andreas Dräger @date 2010-05-19 @since 0.8 @version $Rev: 1524 $

   * @throws IOException 
   * @throws XMLStreamException 
   */
  public static void main(String[] args) throws XMLStreamException, IOException {
    SBMLDocument doc = SBMLReader.read(new File(args[0]));
    Filter filter = new NameFilter(args[1]);
    System.out.println(doc.filter(filter));
  }

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    assertTrue(microM.getUnitCount() == 2);
    assertTrue(microM.getName().equals("microM"));
    assertTrue(microM.getUnit(0).getScale() == -6);
    assertTrue(microM.getUnit(0).getKind().getName().equals("mole"));
    
    int nbSpecies = model.getListOfSpecies().filterList(new Filter() {
      
        /*
         * (non-Javadoc)
         * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
         */

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    assertTrue(model.getLevel() == 1 && model.getVersion() == 1);
    
    assertTrue(model.getId().equals(""));
    assertTrue(model.getName().equals(""));
    
    int nbRateRules = model.getListOfRules().filterList(new Filter() {
      
      /*
       * (non-Javadoc)
       * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
       */
      public boolean accepts(Object o) {
        if (o instanceof RateRule) {
          return true;
        }
        
        return false;
      }
    }).size();


    int nbAssignmentRules = model.getListOfRules().filterList(new Filter() {
      
      /*
       * (non-Javadoc)
       * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
       */

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    assertTrue(model.getLevel() == 1 && model.getVersion() == 1);
    
    assertTrue(model.getId().equals(""));
    assertTrue(model.getName().equals(""));
    
    int nbRateRules = model.getListOfRules().filterList(new Filter() {
      
      /*
       * (non-Javadoc)
       * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
       */
      public boolean accepts(Object o) {
        if (o instanceof RateRule) {
          return true;
        }
        
        return false;
      }
    }).size();


    int nbAssignmentRules = model.getListOfRules().filterList(new Filter() {
      
      /*
       * (non-Javadoc)
       * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
       */

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    assertTrue(model.getLevel() == 1 && model.getVersion() == 1);
    
    assertTrue(model.getId().equals(""));
    assertTrue(model.getName().equals(""));
    
    int nbRateRules = model.getListOfRules().filterList(new Filter() {
      
      /*
       * (non-Javadoc)
       * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
       */
      public boolean accepts(Object o) {
        if (o instanceof RateRule) {
          return true;
        }
        
        return false;
      }
    }).size();


    int nbAssignmentRules = model.getListOfRules().filterList(new Filter() {
      
      /*
       * (non-Javadoc)
       * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
       */

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   * @return the {@link ContainedSpeciesType} that has the given speciesTypeState id or null if
   * no {@link ContainedSpeciesType} are found that match {@code id}.
   */
  public ContainedSpeciesType getContainedSpeciesType(final String id) {
    if (isSetListOfContainedSpeciesTypes()) {
      return listOfContainedSpeciesTypes.firstHit(new Filter() {


        @Override
        public boolean accepts(Object o) {
          if (o instanceof ContainedSpeciesType &&
              ((ContainedSpeciesType) o).getSpeciesTypeState().equals(id)) {

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  {
    if (sbmlDocument.isSetModel() && sbmlDocument.getModel().getExtension(namespaceURI) != null)
    {
      // going through the document to find all Curve objects
      // filtering only on the ListOfLayouts
      List<? extends TreeNode> curveElements = sbmlDocument.getModel().getExtension(namespaceURI).filter(new Filter() {


        @Override
        public boolean accepts(Object o)
        {
          if (o instanceof Curve)

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   * @return the {@link BindingSiteReference} that has the given speciesTypeState id or null if
   * no {@link BindingSiteReference} are found that match {@code id}.
   */
  public BindingSiteReference getUnboundBindingSite(final String id) {
    if (isSetListOfUnboundBindingSites()) {
      return listOfUnboundBindingSites.firstHit(new Filter() {


        @Override
        public boolean accepts(Object o) {
          if (o instanceof BindingSiteReference &&
              ((BindingSiteReference) o).getSpeciesTypeState().equals(id)) {

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  public void processEndDocument(SBMLDocument sbmlDocument) {
    if (sbmlDocument.isSetModel() && sbmlDocument.getModel().getExtension(getNamespaceURI()) != null)
    {
      // going through the document to find all Curve objects
      // filtering only on the ListOfLayouts
      List<? extends TreeNode> curveElements = sbmlDocument.getModel().getExtension(getNamespaceURI()).filter(new Filter() {
        /* (non-Javadoc)
         * @see org.sbml.jsbml.util.filters.Filter#accepts(java.lang.Object)
         */
        @Override
        public boolean accepts(Object o) {

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org.sbml.jsbml.ext.multi.Selector

org.sbml.jsbml.ext.multi.SpeciesTypeState

org.sbml.jsbml.test.FilterTest

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org.sbml.jsbml.xml.parsers.LayoutParser

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