Examples of org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin

        spatialModel.setGeometry(geometry);
        return geometry;
      }
    } else if (contextObject instanceof Compartment) {
      Compartment compartment = (Compartment) contextObject;
      SpatialCompartmentPlugin spatialCompartment = null;
      if (compartment.getExtension(SpatialConstants.namespaceURI) != null) {
        spatialCompartment = (SpatialCompartmentPlugin) compartment.getExtension(SpatialConstants.namespaceURI);
      } else {
        spatialCompartment = new SpatialCompartmentPlugin(compartment);
        compartment.addExtension(SpatialConstants.namespaceURI, spatialCompartment);
      }


      if (elementName.equals(SpatialConstants.compartmentMapping)) {
        CompartmentMapping compartmentMapping = new CompartmentMapping();
        spatialCompartment.setCompartmentMapping(compartmentMapping);
        return compartmentMapping;
      }
    }  else if (contextObject instanceof Parameter) {
      Parameter param = (Parameter) contextObject;
      SpatialParameterPlugin spatialParam = null;


    if (sbase != null) {
      if (sbase instanceof Model) {
        return new SpatialModelPlugin((Model) sbase);
      } else if (sbase instanceof Compartment) {
        return new SpatialCompartmentPlugin((Compartment) sbase);
      } else if (sbase instanceof Species) {
        return new SpatialSpeciesPlugin((Species) sbase);
      } else if (sbase instanceof Parameter) {
        return new SpatialParameterPlugin((Parameter) sbase);
      } else if (sbase instanceof Reaction) {

Examples of org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin

Related Classes of org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin