Package org.sbml.jsbml.ext.spatial

Examples of org.sbml.jsbml.ext.spatial.Domain


        cc.setMaximum(boundary);
        return boundary;
      }

    } else if (contextObject instanceof Domain) {
      Domain domain = (Domain) contextObject;
      if (elementName.equals(SpatialConstants.listOfInteriorPoints)){
        ListOf<InteriorPoint> listOfInteriorPoints = domain.getListOfInteriorPoints();
        return listOfInteriorPoints;
      }
    } else if (contextObject instanceof AnalyticGeometry) {
      AnalyticGeometry analyticGeometry = (AnalyticGeometry) contextObject;
      if (elementName.equals(SpatialConstants.listOfAnalyticVolumes)){
        ListOf<AnalyticVolume> listOfAnalyticVolumes = analyticGeometry.getListOfAnalyticVolumes();
        return listOfAnalyticVolumes;
      }
    } else if (contextObject instanceof SampledFieldGeometry) {
      SampledFieldGeometry sfg = (SampledFieldGeometry) contextObject;
      if (elementName.equals(SpatialConstants.listOfSampledVolumes)){
        ListOf<SampledVolume> listOfSampledVolumes = sfg.getListOfSampledVolumes();
        return listOfSampledVolumes;
      } else if (elementName.equals(SpatialConstants.sampledField)){
        SampledField sf = new SampledField();
        sfg.setSampledField(sf);
        return sf;
      }
    } else if (contextObject instanceof SampledField) {
      SampledField sf = (SampledField) contextObject;
      if (elementName.equals(SpatialConstants.imageData)){
        ImageData im = new ImageData();
        sf.setImageData(im);
        return im;
      }
    } else if (contextObject instanceof CSGeometry) {
      CSGeometry csg = (CSGeometry) contextObject;
      if (elementName.equals(SpatialConstants.listOfCSGObjects)){
        ListOf<CSGObject> listOfCSGObjects = csg.getListOfCSGObjects();
        return listOfCSGObjects;
      }
    } else if (contextObject instanceof CSGObject) {
      CSGObject cso = (CSGObject) contextObject;
      if (elementName.equals(SpatialConstants.csgPrimitive)){
        CSGPrimitive csgNode = new CSGPrimitive();
        cso.setCSGNode(csgNode);
        return csgNode;
      } else if (elementName.equals(SpatialConstants.csgPseudoPrimitive)){
        CSGPseudoPrimitive csgNode = new CSGPseudoPrimitive();
        cso.setCSGNode(csgNode);
        return csgNode;
      } else if (elementName.equals(SpatialConstants.csgSetOperator)){
        CSGSetOperator csgNode = new CSGSetOperator();
        cso.setCSGNode(csgNode);
        return csgNode;
      } else if (elementName.equals(SpatialConstants.csgTranslation)){
        CSGTranslation csgNode = new CSGTranslation();
        cso.setCSGNode(csgNode);
        return csgNode;
      } else if (elementName.equals(SpatialConstants.csgRotation)){
        CSGRotation csgNode = new CSGRotation();
        cso.setCSGNode(csgNode);
        return csgNode;
      } else if (elementName.equals(SpatialConstants.csgScale)){
        CSGScale csgNode = new CSGScale();
        cso.setCSGNode(csgNode);
        return csgNode;
      } else if (elementName.equals(SpatialConstants.csgHomogeneousTransformation)){
        CSGHomogeneousTransformation csgNode = new CSGHomogeneousTransformation();
        cso.setCSGNode(csgNode);
        return csgNode;
      }
    } else if (contextObject instanceof CSGSetOperator) {
      CSGSetOperator csgso = (CSGSetOperator) contextObject;
      if (elementName.equals(SpatialConstants.listOfCSGNodes)) {
        ListOf<CSGNode> listOfCSGNodes = csgso.getListOfCSGNodes();
        return listOfCSGNodes;
      }
    } else if (contextObject instanceof CSGHomogeneousTransformation) {
      CSGHomogeneousTransformation csght = (CSGHomogeneousTransformation) contextObject;
      if (elementName.equals(SpatialConstants.forwardTransformation)) {
        TransformationComponent tc = new TransformationComponent();
        csght.setForwardTransformation(tc);
        return tc;
      } else if (elementName.equals(SpatialConstants.reverseTransformation)) {
        TransformationComponent tc = new TransformationComponent();
        csght.setReverseTransformation(tc);
        return tc;
      }
    } else if (contextObject instanceof ParametricGeometry) {
      ParametricGeometry pg = (ParametricGeometry) contextObject;
      if (elementName.equals(SpatialConstants.listOfSpatialPoints)){
        ListOf<SpatialPoint> listOfSpatialPoints = pg.getListOfSpatialPoints();
        return listOfSpatialPoints;
      } else if (elementName.equals(SpatialConstants.listOfParametricObjects)){
        ListOf<ParametricObject> listOfParametricObjects = pg.getListOfParametricObjects();
        return listOfParametricObjects;
      }
    } else if (contextObject instanceof ParametricObject) {
      ParametricObject po = (ParametricObject) contextObject;
      if (elementName.equals(SpatialConstants.imageData)){
        PolygonObject polygonObject = new PolygonObject();
        po.setPolygonObject(polygonObject);
        return polygonObject;
      }
    }

    else if (contextObject instanceof ListOf<?>) {
      ListOf<SBase> listOf = (ListOf<SBase>) contextObject;

      if (elementName.equals(SpatialConstants.coordinateComponent)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        CoordinateComponent elem = new CoordinateComponent();
        geo.addCoordinateComponent(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.domainType)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        DomainType elem = new DomainType();
        geo.addDomainType(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.domain)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        Domain elem = new Domain();
        geo.addDomain(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.adjacentDomains)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        AdjacentDomains elem = new AdjacentDomains();
        geo.addAdjacentDomain(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.sampledFieldGeometry)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        SampledFieldGeometry elem = new SampledFieldGeometry();
        geo.addGeometryDefinition(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.analyticGeometry)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        AnalyticGeometry elem = new AnalyticGeometry();
        geo.addGeometryDefinition(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.analyticGeometry)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        AnalyticGeometry elem = new AnalyticGeometry();
        geo.addGeometryDefinition(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.csGeometry)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        CSGeometry elem = new CSGeometry();
        geo.addGeometryDefinition(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.parametricGeometry)) {
        Geometry geo = (Geometry) listOf.getParentSBMLObject();
        ParametricGeometry elem = new ParametricGeometry();
        geo.addGeometryDefinition(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.interiorPoint)) {
        Domain domain = (Domain) listOf.getParentSBMLObject();
        InteriorPoint elem = new InteriorPoint();
        domain.addInteriorPoint(elem);
        return elem;
      } else if (elementName.equals(SpatialConstants.analyticVolume)) {
        AnalyticGeometry av = (AnalyticGeometry) listOf.getParentSBMLObject();
        AnalyticVolume elem = new AnalyticVolume();
        av.addAnalyticVolume(elem);
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