Examples of org.sbml.jsbml.ext.layout.Dimensions

org.sbml.jsbml.ext.layout.Dimensions
@author Nicolas Rodriguez @author Sebastian Frölich @author Andreas Dräger @since 1.0 @version $Rev: 1639 $

          double ypos = nodeView.getYPosition();
          double zpos = 0.0;
          double height = nodeView.getHeight();
          double width = nodeView.getWidth();
          double depth = 0.0;
          Dimensions dim = new Dimensions(width, height, depth, level, version);
          Point point = new Point(xpos, ypos, zpos, level, version);
          
          BoundingBox box = new BoundingBox();
          box.setLevel(level);
          box.setVersion(version);

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    }
    return box;
  }
    
  private static void setMissingBoundaryBoxInformation(BoundingBox box) {
    Dimensions dim;
    Point point;
    // Fill Dimension
    if (!box.isSetDimensions()) {
      dim = new Dimensions();
      dim.setHeight(GENERIC_HEIGHT);
      dim.setWidth(GENERIC_WIDTH);
      box.setDimensions(dim);
    } else {
      dim = box.getDimensions();
      if (!dim.isSetHeight()) {
        dim.setHeight(GENERIC_HEIGHT);
      }
      if (!dim.isSetWidth()) {
        dim.setWidth(GENERIC_WIDTH);
      }
    }
    // Fill Positions
    if (!box.isSetPosition()) {
      point = new Point();

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      }
    }
  }
  
  private static BoundingBox createGenericBoundingBox(){
    Dimensions dim = new Dimensions();
    dim.setWidth(GENERIC_WIDTH);
    dim.setHeight(GENERIC_HEIGHT);
    Point point = new Point();
    point.setX(GENERIC_X);
    point.setY(GENERIC_Y);
    BoundingBox box = new BoundingBox();
    box.setDimensions(dim);

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      else if (elementName.equals(listOfAdditionalGraphicalObjects)) {


        newElement = layout.getListOfAdditionalGraphicalObjects();
      }
      else if (elementName.equals(dimensions)) {
        Dimensions dimension = new Dimensions();
        layout.setDimensions(dimension);


        newElement = dimension;
      }


      if (newElement != null) {
        return newElement;
      }
    }
    else if (contextObject instanceof GraphicalObject) {
      GraphicalObject graphicalObject = (GraphicalObject) contextObject;


      if (elementName.equals(boundingBox)) {
        BoundingBox bbox = new BoundingBox();
        graphicalObject.setBoundingBox(bbox);


        return bbox;
      }


      if (graphicalObject instanceof ReactionGlyph)
      {
        ReactionGlyph reactionGlyph = (ReactionGlyph) graphicalObject;


        if (elementName.equals(curve)) {
          Curve curve = new Curve();
          reactionGlyph.setCurve(curve);


          return curve;
        }
        else if (elementName.equals(listOfSpeciesReferenceGlyphs))
        {
          ListOf<SpeciesReferenceGlyph> list = reactionGlyph.getListOfSpeciesReferenceGlyphs();
          return list;
        }


      }
      else if (graphicalObject instanceof SpeciesReferenceGlyph)
      {
        SpeciesReferenceGlyph speciesRefGlyph = (SpeciesReferenceGlyph) contextObject;


        if (elementName.equals(curve)) {
          Curve curve = new Curve();
          speciesRefGlyph.setCurve(curve);


          return curve;
        }


      }
      else if (graphicalObject instanceof GeneralGlyph)
      {
        GeneralGlyph generalGlyph = (GeneralGlyph) graphicalObject;


        if (elementName.equals(curve)) {
          Curve curve = new Curve();
          generalGlyph.setCurve(curve);


          return curve;
        }
        else if (elementName.equals(listOfSubGlyphs))
        {
          ListOf<GraphicalObject> list = generalGlyph.getListOfSubGlyphs();
          return list;
        }
        else if (elementName.equals(listOfReferenceGlyphs))
        {
          ListOf<ReferenceGlyph> list = generalGlyph.getListOfReferenceGlyphs();
          return list;
        }


      }
      else if (graphicalObject instanceof ReferenceGlyph)
      {
        ReferenceGlyph refGlyph = (ReferenceGlyph) contextObject;


        if (elementName.equals(curve)) {
          Curve curve = new Curve();
          refGlyph.setCurve(curve);


          return curve;
        }
      }


    }
    else if (contextObject instanceof BoundingBox)
    {
      BoundingBox bbox = (BoundingBox) contextObject;


      if (elementName.equals(position)) {
        Position position = new Position();
        bbox.setPosition(position);


        return position;
      }
      else if (elementName.equals(dimensions)) {
        Dimensions dimension = new Dimensions();
        bbox.setDimensions(dimension);


        return dimension;
      }
    }

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        } else if (contextObject instanceof Layout) {
          Layout layout = (Layout) contextObject;
          groupList = LayoutList.listOfLayouts;
          if (elementName.equals("dimensions")
              && groupList.equals(LayoutList.listOfLayouts)) {
            Dimensions dimensions = (Dimensions) newContextObject;
            setNamespace(dimensions, namespaceURI);
            layout.setDimensions(dimensions);
            return dimensions;
          } else if (elementName.equals("listOfCompartmentGlyphs")
              && groupList.equals(LayoutList.listOfLayouts)) {
            ListOf<CompartmentGlyph> listOfCompartmentGlyphs = (ListOf<CompartmentGlyph>) newContextObject;
            listOfCompartmentGlyphs.setSBaseListType(ListOf.Type.other);
            layout.setListOfCompartmentGlyphs(listOfCompartmentGlyphs);
            groupList = LayoutList.listOfCompartmentGlyphs;
            return listOfCompartmentGlyphs;
          } else if (elementName.equals("listOfSpeciesGlyphs")
              && groupList.equals(LayoutList.listOfLayouts)) {
            ListOf<SpeciesGlyph> listofSpeciesGlyph = (ListOf<SpeciesGlyph>) newContextObject;
            listofSpeciesGlyph.setSBaseListType(ListOf.Type.other);
            layout.setListOfSpeciesGlyphs(listofSpeciesGlyph);
            groupList = LayoutList.listOfSpeciesGlyphs;
            return listofSpeciesGlyph;
          } else if (elementName.equals("listOfReactionGlyphs")
              && groupList.equals(LayoutList.listOfLayouts)) {
            ListOf<ReactionGlyph> listOfReactionGlyphs = (ListOf<ReactionGlyph>) newContextObject;
            listOfReactionGlyphs.setSBaseListType(ListOf.Type.other);
            layout.setListOfReactionGlyphs(listOfReactionGlyphs);
            groupList = LayoutList.listOfReactionGlyphs;
            return listOfReactionGlyphs;
          } else if (elementName.equals("listOfTextGlyphs")
              && groupList.equals(LayoutList.listOfLayouts)) {
            ListOf<TextGlyph> listOfTextGlyphs = (ListOf<TextGlyph>) newContextObject;
            listOfTextGlyphs.setSBaseListType(ListOf.Type.other);
            layout.setListOfTextGlyphs(listOfTextGlyphs);
            groupList = LayoutList.listOfTextGlyphs;
            return listOfTextGlyphs;
          }
        } else if (contextObject instanceof ReactionGlyph) {
          ReactionGlyph reactionGlyph = (ReactionGlyph) contextObject;
          if (elementName.equals("curve")
              && groupList.equals(LayoutList.listOfReactionGlyphs)) {
            Curve curve = (Curve) newContextObject;
            setNamespace(curve, namespaceURI);
            reactionGlyph.setCurve(curve);
            return curve;
          } else if (elementName
              .equals("listOfSpeciesReferenceGlyphs")
              && groupList.equals(LayoutList.listOfReactionGlyphs)) {
            ListOf<SpeciesReferenceGlyph> listOfSpeciesReferenceGlyphs = (ListOf<SpeciesReferenceGlyph>) newContextObject;
            listOfSpeciesReferenceGlyphs.setSBaseListType(ListOf.Type.other);
            reactionGlyph.setListOfSpeciesReferencesGlyph(listOfSpeciesReferenceGlyphs);
            groupList = LayoutList.listOfSpeciesReferenceGlyphs;
            return listOfSpeciesReferenceGlyphs;
          } else if (elementName.equals("boundingBox")) {
            BoundingBox boundingBox = (BoundingBox) newContextObject;
            setNamespace(boundingBox, namespaceURI);
            reactionGlyph.setBoundingBox(boundingBox);
            return boundingBox;
          }
        } else if (contextObject instanceof SpeciesGlyph) {
          SpeciesGlyph speciesGlyph = (SpeciesGlyph) contextObject;
          if (elementName.equals("boundingBox")) {
            BoundingBox boundingBox = (BoundingBox) newContextObject;
            setNamespace(boundingBox, namespaceURI);
            speciesGlyph.setBoundingBox(boundingBox);
            return boundingBox;
          }
        } else if (contextObject instanceof CompartmentGlyph) {
          if (elementName.equals("boundingBox")
              && groupList.equals(LayoutList.listOfCompartmentGlyphs)) {
            CompartmentGlyph compartmentGlyph = (CompartmentGlyph) contextObject;
            BoundingBox boundingBox = (BoundingBox) newContextObject;
            setNamespace(boundingBox, namespaceURI);
            compartmentGlyph.setBoundingBox(boundingBox);
            return boundingBox;
          }
        } else if (contextObject instanceof TextGlyph) {
          if (elementName.equals("boundingBox")
              && groupList.equals(LayoutList.listOfTextGlyphs)) {
            TextGlyph textGlyph = (TextGlyph) contextObject;
            BoundingBox boundingBox = (BoundingBox) newContextObject;
            setNamespace(boundingBox, namespaceURI);
            textGlyph.setBoundingBox(boundingBox);
            return boundingBox;
          }
        } else if (contextObject instanceof Curve) {
          if (elementName.equals("listOfCurveSegments")
              && groupList.equals(LayoutList.listOfReactionGlyphs)) {
            Curve curve = (Curve) contextObject;
            ListOf<CurveSegment> listOfCurveSegments = (ListOf<CurveSegment>) newContextObject;
            listOfCurveSegments.setSBaseListType(ListOf.Type.other);
            setNamespace(listOfCurveSegments, namespaceURI);
            curve.setListOfCurveSegments(listOfCurveSegments);
            groupList = LayoutList.listOfReactionGlyphs;
            return listOfCurveSegments;
          } else if (elementName.equals("listOfCurveSegments")
              && groupList.equals(LayoutList.listOfSpeciesReferenceGlyphs)) {
            Curve curve = (Curve) contextObject;
            ListOf<CurveSegment> listOfCurveSegments = (ListOf<CurveSegment>) newContextObject;
            listOfCurveSegments.setSBaseListType(ListOf.Type.other);
            setNamespace(listOfCurveSegments, namespaceURI);
            curve.setListOfCurveSegments(listOfCurveSegments);
            groupList = LayoutList.listOfSpeciesReferenceGlyphs;
            return listOfCurveSegments;
          }
        } else if (contextObject instanceof BoundingBox) {
          BoundingBox boundingBox = (BoundingBox) contextObject;
          if (elementName.equals("position")) {
            Point point = (Point) newContextObject;
            setNamespace(point, namespaceURI);
            boundingBox.setPosition(point);
            return point;
          } else if (elementName.equals("dimensions")) {
            Dimensions dimensions = (Dimensions) newContextObject;
            setNamespace(dimensions, namespaceURI);
            boundingBox.setDimensions(dimensions);
            return dimensions;
          }
        } else if (contextObject instanceof CurveSegment) {

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