Examples of org.sbml.jsbml.CompartmentType

org.sbml.jsbml.CompartmentType
Represents the compartmentType XML element of a SBML file. It is deprecated since level 3 and not defined in SBML before Level 2 Version 2. @author Andreas Dräger @since 0.8 @version $Rev: 1525 $ @deprecated Only valid in SBML Level 2 for Versions 2 through 4.

    assertTrue(M.getCompartment(0).equals(c)); // TODO: check why this is failing
  }


  @Test
  public void test_Model_createCompartmentType() {
    CompartmentType c = M.createCompartmentType();
    assertTrue(c != null);
    assertTrue(M.getCompartmentTypeCount() == 1);
    assertEquals(M.getCompartmentType(0), c);
  }

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    o3 = null;
  }


  @Test
  public void test_Model_removeCompartmentType() {
    CompartmentType o1, o2, o3;
    o1 = M.createCompartmentType();
    o2 = M.createCompartmentType();
    o3 = M.createCompartmentType();
    o3.setId("test");
    assertTrue(M.removeCompartmentType(0).equals(o1));

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  private void setCompartmentCompartmentType(Compartment compartment,
      Model model) {
    if (compartment.isSetCompartmentType()) {
      String compartmentTypeID = compartment.getCompartmentType();


      CompartmentType compartmentType = model
          .getCompartmentType(compartmentTypeID);


      if (compartmentType != null) {
        compartment.setCompartmentType(compartmentType);
      } else {

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  /**
   * Test method for {@link org.sbml.jsbml.Model#removeCompartmentType(java.lang.String)}.
   */
  @Test
  public void testRemoveCompartmentTypeString() {
    CompartmentType ct = modelL2V4.createCompartmentType("ct");
    assertTrue(modelL2V4.getCompartmentType(ct.getId()) != null);
    
    modelL2V4.removeCompartmentType(ct.getId());
    assertTrue(modelL2V4.getCompartmentType(ct.getId()) == null);
  }

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              return event;
            } else if (elementName.equals("compartmentType")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartmentTypes)
                && (model.getLevel() == 2 && model.getVersion() > 1)) {
              CompartmentType compartmentType = (CompartmentType) newContextObject;
              model.addCompartmentType(compartmentType);


              return compartmentType;
            } else if (elementName.equals("speciesType")
                && list.getSBaseListType().equals(

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    assertTrue(M.getCompartment(0).equals(c)); // TODO : check why this is failing
  }


  @Test
  public void test_Model_createCompartmentType() {
    CompartmentType c = M.createCompartmentType();
    assertTrue(c != null);
    assertTrue(M.getNumCompartmentTypes() == 1);
    assertEquals(M.getCompartmentType(0), c);
  }

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    o3 = null;
  }


  @Test
  public void test_Model_removeCompartmentType() {
    CompartmentType o1, o2, o3;
    o1 = M.createCompartmentType();
    o2 = M.createCompartmentType();
    o3 = M.createCompartmentType();
    o3.setId("test");
    assertTrue(M.removeCompartmentType(0).equals(o1));

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  private void setCompartmentCompartmentType(Compartment compartment,
      Model model) {
    if (compartment.isSetCompartmentType()) {
      String compartmentTypeID = compartment.getCompartmentType();


      CompartmentType compartmentType = model
          .getCompartmentType(compartmentTypeID);


      if (compartmentType != null) {
        compartment.setCompartmentType(compartmentType);
      } else {

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    assertTrue(M.getCompartment(0).equals(c)); // TODO : check why this is failing
  }


  @Test
  public void test_Model_createCompartmentType() {
    CompartmentType c = M.createCompartmentType();
    assertTrue(c != null);
    assertTrue(M.getNumCompartmentTypes() == 1);
    assertEquals(M.getCompartmentType(0), c);
  }

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    o3 = null;
  }


  @Test
  public void test_Model_removeCompartmentType() {
    CompartmentType o1, o2, o3;
    o1 = M.createCompartmentType();
    o2 = M.createCompartmentType();
    o3 = M.createCompartmentType();
    o3.setId("test");
    assertTrue(M.removeCompartmentType(0).equals(o1));

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Related Classes of org.sbml.jsbml.CompartmentType

org.sbml.jsbml.test.RemoveFromModelTest

org.sbml.jsbml.test.sbml.TestModel

org.sbml.jsbml.xml.parsers.SBMLCoreParser

org.sbml.jsbml.xml.parsers.SBMLLevel1Version1Parser

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