Examples of org.patika.mada.algorithm.LocalPoIQuery

org.patika.mada.algorithm.LocalPoIQuery
Finds the paths from a specified source set of states or entities to a specified target set of states or entities within the boundaries of a specified length limit. Takes source set, target set, type of distance limit, distance limit and strict value. Based on these parameters, the interactions within source set and within target set may be omitted and/or "shortest+k" may be used as length limit. @author Ozgun Babur @author Merve Cakir

    Set<Node> targetSet = new HashSet<Node>();
    targetSet.addAll(main.getRootGraph().getRelatedStates(selectedNodePair.getNodeB()));


    // PoI will be run from the first node in NodePair to the second one
    // with shortest+0 length limit and not strict type
    LocalPoIQuery poi = new LocalPoIQuery(sourceSet, targetSet, LocalPoIQuery.SHORTEST_PLUS_K,
      0, false);
    Set<GraphObject> resultSet = poi.run();


    if (resultSet.size() == 0)
         {
             MessageDialog.openWarning(main.getShell(),
                 "No result!",

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    /**
     * To find the paths between compartments, PoI will be run from
     * the nodes in the source compartment to the nodes in the target
     * compartment
     */
    LocalPoIQuery poi;
        Set<GraphObject> result = new HashSet<GraphObject>();


        //if length limit is selected and strict is unchecked.
        if (options.getLimitType() && !options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                true, options.getLengthLimit(), false);
        }
        //if length limit is selected and strict is checked.
        else if (options.getLimitType() && options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                true, options.getLengthLimit(), true);
        }
        //if shortest+k is selected and strict is unchecked.
        else if (!options.getLimitType() && !options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                false, options.getShortestPlusKLimit(), false);
        }
        //if shortest+k is selected and strict is checked.
        else
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                false, options.getShortestPlusKLimit(), true);
        }


        //Run PoI and add result of PoI to the result set
        result.addAll(poi.run());


        //if no result can be found, open dialog to warn.
        if (result.size() == 0)
        {
            MessageDialog.openWarning(main.getShell(),

View Full Code Here

    
    /**
         * To add the missing paths between the source set and the result set
         * to the query result, PoI must be performed.
         */
        LocalPoIQuery poi = null;
        
        //if downsteam, PoI from source to result
        if (options.isDownstream())
        {
            poi = new LocalPoIQuery(sourceNodesSet,
              streamResult,
                true,
                options.getLengthLimit(),
                false);
        }
        //if upstream, PoI from result to source
        else
        {
            poi = new LocalPoIQuery(streamResult,
              sourceNodesSet,
                true,
                options.getLengthLimit(),
                false);
        }


        //View result of query and Highlight it
        viewAndHighlightResult(poi.run(),
          options.isCurrentView(),
          "Common Stream");
  }

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        /**
         * GoI finds the paths between a set of nodes, thus running GoI is equal
         * to giving the source nodes to PoI as both source set and target set.
         */
        LocalPoIQuery poi = new LocalPoIQuery(sourceNodes, sourceNodes,
            true, options.getLengthLimit(), false);
        result.addAll(poi.run());


        viewAndHighlightResult(result,
            options.isCurrentView(),
            "Graph of Interest");
    }

View Full Code Here

    
    /**
         * To add the missing paths between the source set and the result set
         * to the query result, PoI must be performed.
         */
        LocalPoIQuery poi = null;
        
        //if downsteam, PoI from source to result
        if (options.isDownstream())
        {
            poi = new LocalPoIQuery(sourceNodesSet,
              streamResult,
                true,
                options.getLengthLimit(),
                false);
        }
        //if upstream, PoI from result to source
        else
        {
            poi = new LocalPoIQuery(streamResult,
              sourceNodesSet,
                true,
                options.getLengthLimit(),
                false);
        }


        //View result of query and Highlight it
        viewAndHighlightResult(poi.run(),
          options.isCurrentView(),
          "Common Stream");
  }

View Full Code Here

            {
                targetNodes.add((Node) go);
            }
        }


        LocalPoIQuery poi = null;
        Set<GraphObject> result = new HashSet<GraphObject>();


        //if length limit is selected and strict is unchecked.
        if (options.getLimitType() && !options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                true, options.getLengthLimit(), false);
        }
        //if length limit is selected and strict is checked.
        else if (options.getLimitType() && options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                true, options.getLengthLimit(), true);
        }
        //if shortest+k is selected and strict is unchecked.
        else if (!options.getLimitType() && !options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                false, options.getShortestPlusKLimit(), false);
        }
        //if shortest+k is selected and strict is checked.
        else
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                false, options.getShortestPlusKLimit(), true);
        }


        //Add result of PoI to the result set
        result.addAll(poi.run());


        //if no result can be found, open dialog to warn.
        if (result.size() == 0)
        {
            MessageDialog.openWarning(main.getShell(),

View Full Code Here


        /**
         * GoI finds the paths between a set of nodes, thus running GoI is equal
         * to giving the source nodes to PoI as both source set and target set.
         */
        LocalPoIQuery poi = new LocalPoIQuery(sourceNodes, sourceNodes,
            true, options.getLengthLimit(), false);
        result.addAll(poi.run());


        viewAndHighlightResult(result,
            options.isCurrentView(),
            "Graph of Interest");
    }

View Full Code Here

            {
                targetNodes.add((Node) go);
            }
        }


        LocalPoIQuery poi;
        Set<GraphObject> result = new HashSet<GraphObject>();


        //if length limit is selected and strict is unchecked.
        if (options.getLimitType() && !options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                true, options.getLengthLimit(), false);
        }
        //if length limit is selected and strict is checked.
        else if (options.getLimitType() && options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                true, options.getLengthLimit(), true);
        }
        //if shortest+k is selected and strict is unchecked.
        else if (!options.getLimitType() && !options.isStrict())
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                false, options.getShortestPlusKLimit(), false);
        }
        //if shortest+k is selected and strict is checked.
        else
        {
            poi = new LocalPoIQuery(sourceNodes, targetNodes,
                false, options.getShortestPlusKLimit(), true);
        }


        //Add result of PoI to the result set
        result.addAll(poi.run());


        //if no result can be found, open dialog to warn.
        if (result.size() == 0)
        {
            MessageDialog.openWarning(main.getShell(),

View Full Code Here

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Related Classes of org.patika.mada.algorithm.LocalPoIQuery

org.gvt.action.LocalCommonStreamQueryAction

org.gvt.action.LocalCompartmentQueryAction

org.gvt.action.LocalGoIQueryAction

org.gvt.action.LocalPathIterationQueryAction

org.gvt.action.LocalPoIQueryAction

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