Package org.openbel.framework.core.protonetwork

Examples of org.openbel.framework.core.protonetwork.ProtoNetworkService

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        super(args);

        sysconfig = getSystemConfiguration();
        cache = new DefaultCacheableResourceService();

        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final EquivalenceIndexerService indexer =
                new EquivalenceIndexerServiceImpl();
        final PhaseTwoImpl phaseTwo =
                new PhaseTwoImpl(cache, indexer, protonetService);
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        final CacheableResourceService cache =
                new DefaultCacheableResourceService();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
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        super(args);

        syscfg = getSystemConfiguration();
        cache = new DefaultCacheableResourceService();

        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final EquivalenceIndexerService indexer =
                new EquivalenceIndexerServiceImpl();
        final PhaseTwoImpl phaseTwo =
                new PhaseTwoImpl(cache, indexer, protonetService);
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        final CacheableResourceService cache =
                new DefaultCacheableResourceService();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
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Related Classes of org.openbel.framework.core.protonetwork.ProtoNetworkService

  • org.openbel.framework.core.compiler.PhaseOneIntegrationTest
  • org.openbel.framework.tools.PhaseOneApplication
  • org.openbel.framework.tools.PhaseThreeApplication
  • org.openbel.framework.tools.PhaseTwoApplication
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