Package org.openbel.framework.core.equivalence

Examples of org.openbel.framework.core.equivalence.EquivalenceIndexerServiceImpl

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        cache = new DefaultCacheableResourceService();

        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final EquivalenceIndexerService indexer =
                new EquivalenceIndexerServiceImpl();
        final PhaseTwoImpl phaseTwo =
                new PhaseTwoImpl(cache, indexer, protonetService);
        phaseTwo.setReportable(getReportable());

        p2 = phaseTwo;
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        cache = new DefaultCacheableResourceService();

        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final EquivalenceIndexerService indexer =
                new EquivalenceIndexerServiceImpl();
        final PhaseTwoImpl phaseTwo =
                new PhaseTwoImpl(cache, indexer, protonetService);
        phaseTwo.setReportable(getReportable());

        p2 = phaseTwo;
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    @Test
    public void testEquivalence() {
        // load equivalences using PhaseTwo
        final DefaultPhaseTwo p2 = new PhaseTwoImpl(
                new DefaultCacheableResourceService(),
                new EquivalenceIndexerServiceImpl(),
                new ProtoNetworkServiceImpl());

        assertThat("test protonetwork is null", pn, notNullValue());

        final Set<EquivalenceDataIndex> equivs;
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Related Classes of org.openbel.framework.core.equivalence.EquivalenceIndexerServiceImpl

  • org.openbel.framework.common.model.DataFileIndex
  • org.openbel.framework.core.df.beldata.equivalence.EquivalenceHeaderProcessor
  • org.openbel.framework.core.indexer.Indexer
  • org.openbel.framework.test.EquivalenceIT
  • org.openbel.framework.tools.PhaseThreeApplication
  • org.openbel.framework.tools.PhaseTwoApplication
  • java.io.File
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