Package org.openbel.framework.core.compiler.expansion

Examples of org.openbel.framework.core.compiler.expansion.ExpansionService

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     * @param a {@link Document}
     * @param b {@link Document}
     * @return merged {@link ProtoNetwork}
     */
    private ProtoNetwork merge(Document a, Document b) {
        ExpansionService es = new ExpansionServiceImpl();
        ProtoNetworkBuilder builder = new ProtoNetworkBuilder(a);
        ProtoNetwork networkA = builder.buildProtoNetwork();
        es.expandTerms(a, networkA);
        builder = new ProtoNetworkBuilder(b);
        ProtoNetwork n2 = builder.buildProtoNetwork();
        es.expandTerms(b, n2);
        ProtoNetworkMerger merger = new ProtoNetworkMerger();
        merger.merge(networkA, n2);
        return networkA;
    }
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                new NamespaceIndexerServiceImpl();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        final AnnotationDefinitionService annotationDefinitionService =
                new DefaultAnnotationDefinitionService(cache, cacheLookup);
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        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        final AnnotationDefinitionService annotationDefinitionService =
                new DefaultAnnotationDefinitionService(cache, cacheLookup);
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        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final ProtoNetworkService protonetService =
                new ProtoNetworkServiceImpl();
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();
        final AnnotationService annotationService =
                new DefaultAnnotationService();
        final AnnotationDefinitionService annotationDefinitionService =
                new DefaultAnnotationDefinitionService(cache, cacheLookup);
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Related Classes of org.openbel.framework.core.compiler.expansion.ExpansionService

  • org.openbel.framework.core.compiler.PhaseOneIntegrationTest
  • org.openbel.framework.core.protonetwork.ProtoNetworkMerge_CommutativeTest
  • org.openbel.framework.tools.PhaseOneApplication
  • org.openbel.framework.tools.PhaseThreeApplication
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