Package org.openbel.bel.model

Examples of org.openbel.bel.model.BELNamespaceDefinition

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    public void testNamespaceGroupConversion() {
        // setup test BELDocument with one default and one custom namespace
        final BELDocumentHeader dh = new BELDocumentHeader("Unit Test",
                "Unit Test", "1.0");
        final Set<BELNamespaceDefinition> nsset = constrainedHashSet(2);
        nsset.add(new BELNamespaceDefinition("HGNC", DEFAULT_NS, true));
        nsset.add(new BELNamespaceDefinition("EGID", NS, false));
        final List<BELStatementGroup> sglist = sizedArrayList(1);
        final BELStatementGroup sg = new BELStatementGroup("Example");
        sg.getStatements().add(new BELStatement("p(AKT1) => g(EGID:1024)"));
        sglist.add(sg);
        final BELDocument beldoc = new BELDocument(dh, null, nsset, sglist);
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                    final String nametext = name.getText();
                    final String rloctext = rloc.getText();

                    BELNamespaceDefinition belnsd;
                    if (isdefault != null) {
                        belnsd = new BELNamespaceDefinition(nametext, rloctext, true);
                    } else {
                        belnsd = new BELNamespaceDefinition(nametext, rloctext, false);
                    }

                    nslist.add(belnsd);
                    definedNamespaces.put(nametext, belnsd);
               
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    public BELNamespaceDefinition convert(Namespace n) {
        if (n == null) {
            return null;
        }

        return new BELNamespaceDefinition(n.getPrefix(),
                n.getResourceLocation(), false);
    }
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Related Classes of org.openbel.bel.model.BELNamespaceDefinition

  • org.openbel.framework.common.bel.converters.BELDocumentConverterTest
  • org.openbel.framework.common.bel.converters.BELNamespaceDefinitionConverter
  • org.openbel.framework.common.bel.parser.BELScriptWalker
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