Package org.obolibrary.oboformat.model

Examples of org.obolibrary.oboformat.model.QualifierValue

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                value = ((OWLLiteral) ann.getValue()).getLiteral();
            } else if (ann.getValue() instanceof IRI) {
                value = getIdentifier((IRI) ann.getValue());
            }
            assert value != null;
            QualifierValue qv = new QualifierValue(prop, value);
            c.addQualifierValue(qv);
        }
    }
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                    c.addValue(cls2);
                    equivalenceAxiomClauses.add(c);
                    if (exact != null) {
                        String string = exact.toString();
                        assert string != null;
                        c.addQualifierValue(new QualifierValue("cardinality",
                                string));
                    }
                    if (min != null) {
                        String string = min.toString();
                        assert string != null;
                        c.addQualifierValue(new QualifierValue(
                                "minCardinality", string));
                    }
                    if (max != null) {
                        String string = max.toString();
                        assert string != null;
                        c.addQualifierValue(new QualifierValue(
                                "maxCardinality", string));
                    }
                    if (allSome != null) {
                        String string = allSome.toString();
                        assert string != null;
                        c.addQualifierValue(new QualifierValue("all_some",
                                string));
                    }
                    if (allOnly != null) {
                        String string = allOnly.toString();
                        assert string != null;
                        c.addQualifierValue(new QualifierValue("all_only",
                                string));
                    }
                    addQualifiers(c, ax.getAnnotations());
                } else if (!f.getClauses(OboFormatTag.TAG_INTERSECTION_OF)
                        .isEmpty()) {
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                        }
                    }
                }
                if (c != null && p != null && filler != null) {
                    sub = c;
                    qvs.add(new QualifierValue("gci_relation", getIdentifier(p)));
                    qvs.add(new QualifierValue("gci_filler",
                            getIdentifier(filler)));
                }
            }
        }
        if (sub instanceof OWLClass) {
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        if (restriction instanceof OWLObjectMinCardinality) {
            q = "minCardinality";
        } else if (restriction instanceof OWLObjectMaxCardinality) {
            q = "maxCardinality";
        }
        c.addQualifierValue(new QualifierValue(q, Integer.toString(restriction
                .getCardinality())));
        addQualifiers(c, ax.getAnnotations());
        return c;
    }
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            for (QualifierValue newQV : newQVs) {
                String newQualifier = newQV.getQualifier();
                // if min or max cardinality check for possible merges
                if ("minCardinality".equals(newQualifier)
                        || "maxCardinality".equals(newQualifier)) {
                    QualifierValue match = findMatchingQualifierValue(newQV,
                            targetQVs);
                    if (match != null) {
                        mergeQualifierValues(match, newQV);
                    } else {
                        target.addQualifierValue(newQV);
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        }
        if (v.isEmpty()) {
            warn("Empty value for qualifier in trailing qualifier block.");
            v = "";
        }
        QualifierValue qv = new QualifierValue(q, v);
        cl.addQualifierValue(qv);
        parseZeroOrMoreWs();
        return true;
    }
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        assertEquals(2, clauses.size());
        for (Clause clause : clauses) {
            Collection<QualifierValue> qualifierValues = clause
                    .getQualifierValues();
            assertEquals(1, qualifierValues.size());
            QualifierValue value = qualifierValues.iterator().next();
            assertEquals("cardinality", value.getQualifier());
            if (clause.getValue2().equals("PR:000005116")) {
                assertEquals("1", value.getValue());
            } else if (clause.getValue2().equals("PR:000027122")) {
                assertEquals("2", value.getValue());
            }
        }
    }
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        for (Clause clause : propertyValues) {
            if ("IAO:0000118".equals(clause.getValue())
                    && "started by".equals(clause.getValue2())) {
                Collection<QualifierValue> values = clause.getQualifierValues();
                assertEquals(1, values.size());
                QualifierValue value = values.iterator().next();
                assertEquals("http://purl.obolibrary.org/obo/IAO_0000116",
                        value.getQualifier());
                assertEquals("From Allen terminology", value.getValue());
                found = true;
            }
        }
        assertTrue(
                "The expected annotations on the property value are missing.",
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        Collection<QualifierValue> qvs = clause.getQualifierValues();
        if (!qvs.isEmpty()) {
            sb.append(" {");
            Iterator<QualifierValue> qvsIterator = qvs.iterator();
            while (qvsIterator.hasNext()) {
                QualifierValue qv = qvsIterator.next();
                sb.append(qv.getQualifier());
                sb.append("=\"");
                sb.append(escapeOboString(qv.getValue(), EscapeMode.quotes));
                sb.append('"');
                if (qvsIterator.hasNext()) {
                    sb.append(", ");
                }
            }
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Related Classes of org.obolibrary.oboformat.model.QualifierValue

  • org.obolibrary.obo2owl.OWLAPIOwl2Obo
  • org.obolibrary.obo2owl.RoundTripCardinalityTest
  • org.obolibrary.obo2owl.RoundTripOWLROTest
  • org.obolibrary.oboformat.parser.OBOFormatParser
  • org.obolibrary.oboformat.writer.OBOFormatWriter
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