Package org.moltools.lib.seq.impl

Examples of org.moltools.lib.seq.impl.SimpleDNASequenceBuilder

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          String libFileName = split[1];
          File libFile = new File(libFileName);
          if (!libFile.getAbsolutePath().equals(libFile.getPath())) {
            libFile = new File(settingsFile.getAbsoluteFile().getParentFile(),libFile.getPath());
          }
          DefiniteSequenceDB<NucleotideSequence> tagseqs = SequenceIO.readSequenceDB(new FileReader(libFile), new FastaDBFormat<NucleotideSequence>(), null, ListSequenceDB.getDefaultBuilder(),new SimpleDNASequenceBuilder());
          TagLibrary lib = new DefaultTagLibrary(tagseqs,"taglib"+ti); //$NON-NLS-1$
          lib.setMode(mode);
          libs.add(lib);
          ti++;
        }
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          String libFileName = split[1];
          File libFile = new File(libFileName);
          if (!libFile.getAbsolutePath().equals(libFile.getPath())) {
            libFile = new File(settingsFile.getAbsoluteFile().getParentFile(),libFile.getPath());
          }
          DefiniteSequenceDB<NucleotideSequence> tagseqs = SequenceIO.readSequenceDB(new FileReader(libFile), new FastaDBFormat<NucleotideSequence>(), null, ListSequenceDB.getDefaultBuilder(),new SimpleDNASequenceBuilder());
          TagLibrary lib = new DefaultTagLibrary(tagseqs,"taglib"+ti); //$NON-NLS-1$
          lib.setMode(mode);
          libs.add(lib);
          ti++;
        }
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Related Classes of org.moltools.lib.seq.impl.SimpleDNASequenceBuilder

  • org.moltools.apps.probemaker.ProbeMakerLauncher
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