Package org.moltools.design.calc

Examples of org.moltools.design.calc.FractionalNNParameters

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  public PadlockLigationCalculator() {
    parameters = getDefaultParameters();
    readParameters();
    try {
      fmpc = new FractionalMeltingPointCalculator(new FractionalNNParameters());
    }
    catch (IOException e) {
      throw new RuntimeException("NN parameters could not be found", e); //$NON-NLS-1$
    }
  }
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          });
      setData(KEY_ALLOWED_COMPLEMENTARITY_SCORE,new Double(30));
      setData(KEY_COMPLEMENTARITY_SCORE_LIMIT,new Double(10));

    try {
      fmpc = new FractionalMeltingPointCalculator(new FractionalNNParameters());     
    }
    catch (IOException e) {
      throw new RuntimeException("NN Parameters file could not be found/read",e); //$NON-NLS-1$
    }
  }
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            },new DataDescriptor[] {
        new IntegerDescriptor("Max Tm for target priming","Tm limit for target priming calculations","MAX_TARGET_PRIMING_TEMP",0,100) //$NON-NLS-1$ //$NON-NLS-2$ //$NON-NLS-3$
    });
    setData("MAX_TARGET_PRIMING_TEMP",new Integer(40)); //$NON-NLS-1$
    try {
      fmpc = new FractionalMeltingPointCalculator(new FractionalNNParameters());
    }
    catch (IOException iox) {
      throw new RuntimeException("Parameters file not found", iox); //$NON-NLS-1$
    }
  }
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  public PadlockLigationCalculator() {
    parameters = getDefaultParameters();
    readParameters();
    try {
      fmpc = new FractionalMeltingPointCalculator(new FractionalNNParameters());
    }
    catch (IOException e) {
      throw new RuntimeException("NN parameters could not be found", e); //$NON-NLS-1$
    }
  }
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          });
      setData(KEY_ALLOWED_COMPLEMENTARITY_SCORE,new Double(30));
      setData(KEY_COMPLEMENTARITY_SCORE_LIMIT,new Double(10));

    try {
      fmpc = new FractionalMeltingPointCalculator(new FractionalNNParameters());
    }
    catch (IOException e) {
      throw new RuntimeException("NN Parameters file could not be found/read",e); //$NON-NLS-1$
    }
  }
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Related Classes of org.moltools.design.calc.FractionalNNParameters

  • org.moltools.apps.probemaker.calculators.PadlockLigationCalculator
  • org.moltools.apps.probemaker.ext.mod.FalsePrimingModule
  • org.moltools.apps.probemaker.ext.mod.TmProbeDimerModule
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