Package org.mcisb.beacon.model

Examples of org.mcisb.beacon.model.ResultState


      Result result = (Result)unmarshaller.unmarshal(f);
      ResultTimeSeries timeSeries = result.getResultTimeSeries();
      List<ResultState> resultStates = timeSeries.getResultState();
      times = new double[resultStates.size()];
      for (int i=0; i< resultStates.size(); i++) {
        ResultState resultState = (ResultState) resultStates.get(i);
        times[i]=resultState.getTimeStamp();
      }
     
      //So, get the channels and get a set of cells.
      ResultState tempState = (ResultState)resultStates.get(0);
      int channelNumbers = tempState.getCell().get(0).getCellProperty().get(0).getChannel().size();
      int cellNumbers = tempState.getCell().size();
      CellData[] cells = new CellData[cellNumbers];

     
      //Channels...
      String[] channelNames = new String[channelNumbers];
      for (int i=0; i<channelNumbers; i++) {
        channelNames[i]= tempState.getCell().get(0).getCellProperty().get(0).getChannel().get(i).getChannelName();
      }
      for (int i=0; i< cellNumbers;i++) {
        cells[i]= new CellData(channelNames,"bob");
      }
      //Cells...
      for (int i=0; i<resultStates.size();i++) {
        tempState = (ResultState)resultStates.get(i);
        for (int j=0; j< cellNumbers; j++) {
          double[] cytvalue = new double[channelNumbers];
          double[] nucvalue = new double[channelNumbers];
          for (int k =0; k<channelNumbers;k++) {
            cytvalue[k]= tempState.getCell().get(j).getCellularCompartment().get(0).getCellProperty().get(1).getChannel().get(k).getChannelIntensity();
            nucvalue[k]= tempState.getCell().get(j).getCellularCompartment().get(1).getCellProperty().get(1).getChannel().get(k).getChannelIntensity();
          }
          cells[j].addCyt(cytvalue);
          cells[j].addNuc(nucvalue);
          if (i==resultStates.size()-1) {
            cells[j].finalise();
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