Package org.jmol.util

Examples of org.jmol.util.FastBitSet

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    for (int i = 0; i < atomCount; i++) {
      if (dotsConvexMaps[i] == null || !bsOn.get(i))
        continue;
      if (bsColixSet != null && bsColixSet.get(i))
        setStateInfo(temp, i, getColorCommand(type, paletteIDs[i], colixes[i]));
      FastBitSet bs = dotsConvexMaps[i];
      if (!bs.isEmpty()) {
        float r = ec.getAppropriateRadius(i);
        appendCmd(s, type + i + " radius " + r + " "
            + Escape.escape(bs.toBitSet()));
      }
    }
    s.append(getShapeCommands(temp, null));
    return s.toString();
  }
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      viewer.transformVector(Geodesic.getVertexVector(i),
          verticesTransformed[i]);
    FastBitSet[] maps = dots.ec.getDotsConvexMaps();
    for (int i = dots.ec.getDotsConvexMax(); --i >= 0;) {
      Atom atom = modelSet.atoms[i];
      FastBitSet map = maps[i];
      if (map == null || !atom.isVisible(myVisibilityFlag)
          || !g3d.isInDisplayRange(atom.screenX, atom.screenY))
        continue;
      int nPoints = calcScreenPoints(map, dots.ec.getAppropriateRadius(i),
          atom.screenX, atom.screenY, atom.screenZ);
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    for (int iDot = geodesicCount; --iDot >= 0;)
      if (!bs.get(iDot))
        geodesicMap.clear(iDot);
    if (dotsConvexMaps == null)
      dotsConvexMaps = new FastBitSet[atomCount];
    FastBitSet map;
    if (geodesicMap.isEmpty())
      map = emptySet;
    else
      map = new FastBitSet(geodesicMap);
    dotsConvexMaps[index] = map;
    dotsConvexMax = Math.max(dotsConvexMax, index);
  }
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  private void calcConvexMap(boolean isSurface) {
    if (dotsConvexMaps == null)
      dotsConvexMaps = new FastBitSet[atomCount];
    calcConvexBits();
    FastBitSet map;
    if (geodesicMap.isEmpty())
      map = emptySet;
    else {
      bsSurface.set(indexI);
      if (isSurface) {
        addIncompleteFaces(geodesicMap);
        addIncompleteFaces(geodesicMap);
      }
      map = new FastBitSet(geodesicMap);
    }
    dotsConvexMaps[indexI] = map;
  }
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Related Classes of org.jmol.util.FastBitSet

  • org.jmol.geodesic.EnvelopeCalculation
  • org.jmol.shapespecial.Dots
  • org.jmol.shapespecial.DotsRenderer
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