Examples of org.gvt.util.SIFReader

org.gvt.util.SIFReader
This class is extended from XMLReader but it reads txt files. This is because the class XMLReader is incorrectly named. It does nothing about xml files, it should have been named as FileReader. @author Ozgun BaburCopyright: Bilkent Center for Bioinformatics, 2007 - present

      siffile = dialog.getSiffile();
      genesfile = dialog.getGenefile();
      limit = dialog.getLimit();
      directed = dialog.getDirected();


      SIFReader sifReader = new SIFReader(selectedRuleTypes);
      BasicSIFGraph graph = (BasicSIFGraph) sifReader.readXMLFile(new File(siffile));


      if (graph.getNodes().isEmpty())
      {
        MessageDialog.openInformation(main.getShell(), "Graph empty!",
          "Loaded SIF file does not have any interaction of specified type.");

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        main.getHighlightLayer().highlighted.clear();
      }


      File xmlfile = new File(filename);


      SIFReader reader = new SIFReader();


      CompoundModel root = reader.readXMLFile(xmlfile);


      if (root != null)
      {
        main.createNewTab(root);

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      siffile = dialog.getSiffile();
      genesfile = dialog.getGenefile();
      limit = dialog.getLimit();
      directed = dialog.getDirected();


      SIFReader sifReader = new SIFReader(selectedRuleTypes);
      BasicSIFGraph graph = (BasicSIFGraph) sifReader.readXMLFile(new File(siffile));


      if (graph.getNodes().isEmpty())
      {
        MessageDialog.openInformation(main.getShell(), "Graph empty!",
          "Loaded SIF file does not have any interaction of specified type.");

View Full Code Here

        main.getHighlightLayer().highlighted.clear();
      }


      File xmlfile = new File(filename);


      SIFReader reader = new SIFReader();


      CompoundModel root = reader.readXMLFile(xmlfile);


      if (root != null)
      {
        main.createNewTab(root);

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Related Classes of org.gvt.util.SIFReader

org.eclipse.swt.widgets.MessageBox

org.eclipse.swt.widgets.Shell

org.gvt.action.GOIofSIFAction

org.gvt.action.LoadSIFFileAction

org.gvt.model.basicsif.BasicSIFEdge

org.gvt.model.basicsif.BasicSIFGraph

org.gvt.model.basicsif.BasicSIFNode

org.patika.mada.util.XRef

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