Package org.gvt.model.biopaxl3

Examples of org.gvt.model.biopaxl3.Actor

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      for (Object obj : allNodes)
    {
        //get entity of Node
      if (obj instanceof Actor)
      {
        Actor act = (Actor) obj;
        entity = act.getEntity();
      }
      else if (obj instanceof Complex)
      {
        Complex com = (Complex) obj;
        entity = com.getEntity();
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      {
        NodeModel model = (NodeModel) o;

        if (model instanceof Actor)
        {
          Actor actor = (Actor) model;

          System.out.println(actor.getEntity().l3pe.getRDFId());
        }
        else if (o instanceof ChbComplex)
        {
          ChbComplex cmp = (ChbComplex) o;
          System.out.println(cmp.getComplex().getRDFId());
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          BioPAXL2Reader reader = new BioPAXL2Reader(model);
          reader.createGraph((BioPAXL2Graph) root);
        }
        else if (level == BioPAXLevel.L3)
        {
          root = new BioPAXL3Graph(model);
          BioPAXL3Reader reader = new BioPAXL3Reader(model);
          reader.createGraph((BioPAXL3Graph) root);
        }
      }
    }
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          System.out.println(actor.getEntity().l3pe.getRDFId());
        }
        else if (o instanceof ChbComplex)
        {
          ChbComplex cmp = (ChbComplex) o;
          System.out.println(cmp.getComplex().getRDFId());
        }
      }
    }

  }
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      for (GraphObject go : content)
      {
        if (go instanceof ChbConversion)
        {
          ChbConversion conv = (ChbConversion) go;
          org.biopax.paxtools.model.level3.Conversion cnv = conv.getConversion();
          convSet.add(cnv);
        }
      }

      Set<Process> components = l3p.getPathwayComponent();
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Related Classes of org.gvt.model.biopaxl3.Actor

  • eu.mosaic_cloud.tools.callbacks.core.CallbackCanceled
  • eu.mosaic_cloud.tools.callbacks.core.CallbackHandler
  • org.biopax.paxtools.model.level3.Interaction
  • org.biopax.paxtools.model.level3.Pathway
  • org.eclipse.draw2d.geometry.Dimension
  • org.eclipse.draw2d.geometry.Point
  • org.eclipse.swt.graphics.Color
  • org.eclipse.swt.graphics.Font
  • org.eclipse.swt.graphics.FontData
  • org.gvt.action.DebugButtonAction
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