this.selectedRuleTypes = selectedRuleTypes;
}
public void run()
{
GOIofSIFParameterDialog dialog = new GOIofSIFParameterDialog(main.getShell(),
SIFGraph.getPossibleRuleTypes(BioPAXLevel.L2),
selectedRuleTypes,
siffile,
genesfile,
limit,
directed);
if (dialog.open())
{
siffile = dialog.getSiffile();
genesfile = dialog.getGenefile();
limit = dialog.getLimit();
directed = dialog.getDirected();
SIFReader sifReader = new SIFReader(selectedRuleTypes);
BasicSIFGraph graph = (BasicSIFGraph) sifReader.readXMLFile(new File(siffile));
if (graph.getNodes().isEmpty())