Examples of org.cytoscape.ClusterViz.internal.algorithm.FAGEC

    


      } else if (alg instanceof FAGEC)//
      {


        FAGEC algFagec = (FAGEC) alg;


        algFagec.setTaskMonitor(taskMonitor, network.getSUID());
  
          taskMonitor.setProgress(0);
          taskMonitor
              .setStatusMessage("Step 2 of 3:Generating Complexes...");
          clusters = algFagec.run(network, this.resultId);
          System.err.println("After FAG-EC.Time used:"
              + algFagec.getLastFindTime());
          if (interrupted)
            return;
          taskMonitor.setProgress(0);
          taskMonitor
              .setStatusMessage("Step 3 of 3: Drawing the Result Network...");

        if(currentParamsCopy.getAlgorithm().equals(ParameterSet.MCODE ))
            alg1 = new MCODE(network.getSUID(), this.clusterUtil);
        if(currentParamsCopy.getAlgorithm().equals(ParameterSet.EAGLE ))
            alg1 = new EAGLE(network.getSUID(), this.clusterUtil);
        if(currentParamsCopy.getAlgorithm().equals(ParameterSet.FAGEC ))
            alg1 = new FAGEC(network.getSUID(), this.clusterUtil);
        this.clusterUtil.addNetworkAlgorithm(network.getSUID().longValue(), alg1);
        
 /*       
        //if (!networkManager.containsKey(network.getIdentifier())){
          newNet=true;

Related Classes of org.cytoscape.ClusterViz.internal.algorithm.FAGEC

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