Package org.cytoscape.ClusterViz.internal

Examples of org.cytoscape.ClusterViz.internal.MyTipTool


        weakPanel.setLayout(new BorderLayout());
        //the label
        JLabel label=new JLabel("Threshold")//Clique Size Threshold input
        fThreshold = new JFormattedTextField(decimal) {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        //the input text field
        fThreshold.setColumns(3);
        fThreshold.addPropertyChangeListener("value", new FAGECPanel.FormattedTextFieldAction());
        String tip2 = "threshold to define a module\n" +
                "It stands for the proportion of\n"+
                "the indegree to the outdegree of a clique";
        fThreshold.setToolTipText(tip2);
        fThreshold.setText((new Double(currentParameters.getfThreshold()).toString()));
        weakPanel.add(fThreshold,BorderLayout.EAST);
        weakPanel.add(label,BorderLayout.WEST)
        weakPanel.setVisible(true);
       
        //the cliqueSize Panel
        cliqueSizePanel=createCliqueSizePanel();
        //the ComplexSize Panel
        JPanel complexSizePanel=createComplexSizePanel();
       
        //Produce Overlapped Complexes input
        JLabel overlapLabel = new JLabel(" Produce Overlapped Complexes");
        overlapped = new JCheckBox() {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        overlapped.addItemListener(new overlappedCheckBoxAction());
        String overlapTip = "Produce overlapped module.";
        overlapped.setToolTipText(overlapTip);
        overlapped.setSelected(currentParameters.isOverlapped());
        JPanel overlapPanel = new JPanel() {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        overlapPanel.setLayout(new BorderLayout());
        overlapPanel.setToolTipText(overlapTip);
        overlapPanel.add(overlapLabel, BorderLayout.WEST);
View Full Code Here


      JPanel panel;
        //the label
        JLabel sizeThresholdLabel=new JLabel(" CliqueSize Threshold")//Clique Size Threshold input
        cliqueSizeThreshold = new JFormattedTextField(decimal) {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        //the input text field
        cliqueSizeThreshold.setColumns(3);
        cliqueSizeThreshold.addPropertyChangeListener("value", new FAGECPanel.FormattedTextFieldAction());
        String tip = "size cutoff of maximal clique\n" +
            "maximal cliques smaller than this will be\n" +
            "regarded as subordinate and filtered\n"+
            "the value is recommended to be set 2~5";
        cliqueSizeThreshold.setToolTipText(tip);
        cliqueSizeThreshold.setText((new Integer(currentParameters.getCliqueSizeThreshold()).toString()));
        //the panel
        panel = new JPanel() {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        //add the components to the panel
        panel.setLayout(new BorderLayout());
        panel.setToolTipText(tip);
View Full Code Here

        //the label
        JLabel sizeThresholdLabel2=new JLabel(" ComplexSize Threshold")//Clique Size Threshold input
        //the input text field
        complexSizeThreshold = new JFormattedTextField(decimal) {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        complexSizeThreshold.setColumns(3);
        complexSizeThreshold.addPropertyChangeListener("value", new FAGECPanel.FormattedTextFieldAction());
        String tip3 = "size cutoff of modules to be outputed\n" +
View Full Code Here

      JPanel panel;
        //the label
        JLabel sizeThresholdLabel=new JLabel(" CliqueSize Threshold")//Clique Size Threshold input
        cliqueSizeThreshold = new JFormattedTextField(decimal) {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        //the input text field
        cliqueSizeThreshold.setColumns(3);
        cliqueSizeThreshold.addPropertyChangeListener("value", new EAGLEpanel.FormattedTextFieldAction());
        String tip = "size cutoff of maximal clique\n" +
                "maximal cliques smaller than this will be\n" +
                "regarded as subordinate and filtered\n"+
                "the value is recommended to be set 2~5";
        cliqueSizeThreshold.setToolTipText(tip);
        cliqueSizeThreshold.setText((new Integer(currentParameters.getCliqueSizeThreshold1()).toString()));
        //the panel
        panel = new JPanel() {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        //add the components to the panel
        panel.setLayout(new BorderLayout());
        panel.setToolTipText(tip);
View Full Code Here

        //the label
        JLabel sizeThresholdLabel2=new JLabel(" ComplexSize Threshold")//Clique Size Threshold input
        //the input text field
        complexSizeThreshold= new JFormattedTextField(decimal) {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        complexSizeThreshold.setColumns(3);
        complexSizeThreshold.addPropertyChangeListener("value", new EAGLEpanel.FormattedTextFieldAction());
        String tip3 = "size cutoff of modules to be outputed\n" +
View Full Code Here

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