Package org.cytoscape.ClusterViz.internal

Examples of org.cytoscape.ClusterViz.internal.CollapsiblePanel


        this.setLayout(new BorderLayout());
        this.setBorder(BorderFactory.createTitledBorder(""));
       
        //the collapsible panel
        CollapsiblePanel collapsiblePanel = new CollapsiblePanel("FAG-EC Options");
        JPanel panel = new JPanel();
        panel.setLayout(new BoxLayout(panel,BoxLayout.Y_AXIS));
        panel.setBorder(BorderFactory.createTitledBorder(""));
       
        //the radio botton panel
        JPanel functionPanel=new JPanel();
        functionPanel.setLayout(new BorderLayout());
        //the radio bottons
        weak = new JRadioButton("Weak",true);
        weak.setToolTipText("use weak module definition");
        strong = new JRadioButton("Strong", false);
        strong.setToolTipText("use strong module definition");
        ButtonGroup choices = new ButtonGroup();
        choices.add(weak);
        choices.add(strong);
        weak.addActionListener(new FunctionAction());
        strong.addActionListener(new FunctionAction());
        functionPanel.add(weak,BorderLayout.WEST);
        functionPanel.add(strong,BorderLayout.CENTER);       
       
        //the weak module definition parameter input Panel
        weakPanel = new JPanel();
        weakPanel.setLayout(new BorderLayout());
        //the label
        JLabel label=new JLabel("Threshold")//Clique Size Threshold input
        fThreshold = new JFormattedTextField(decimal) {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        //the input text field
        fThreshold.setColumns(3);
        fThreshold.addPropertyChangeListener("value", new FAGECPanel.FormattedTextFieldAction());
        String tip2 = "threshold to define a module\n" +
                "It stands for the proportion of\n"+
                "the indegree to the outdegree of a clique";
        fThreshold.setToolTipText(tip2);
        fThreshold.setText((new Double(currentParameters.getfThreshold()).toString()));
        weakPanel.add(fThreshold,BorderLayout.EAST);
        weakPanel.add(label,BorderLayout.WEST)
        weakPanel.setVisible(true);
       
        //the cliqueSize Panel
        cliqueSizePanel=createCliqueSizePanel();
        //the ComplexSize Panel
        JPanel complexSizePanel=createComplexSizePanel();
       
        //Produce Overlapped Complexes input
        JLabel overlapLabel = new JLabel(" Produce Overlapped Complexes");
        overlapped = new JCheckBox() {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        overlapped.addItemListener(new overlappedCheckBoxAction());
        String overlapTip = "Produce overlapped module.";
        overlapped.setToolTipText(overlapTip);
        overlapped.setSelected(currentParameters.isOverlapped());
        JPanel overlapPanel = new JPanel() {
            public JToolTip createToolTip() {
                return new MyTipTool();
            }
        };
        overlapPanel.setLayout(new BorderLayout());
        overlapPanel.setToolTipText(overlapTip);
        overlapPanel.add(overlapLabel, BorderLayout.WEST);
        overlapPanel.add(overlapped, BorderLayout.EAST);
        panel.add(functionPanel);
        panel.add(weakPanel)
        panel.add(complexSizePanel);
        panel.add(overlapPanel);     
        panel.add(cliqueSizePanel);
        cliqueSizePanel.setVisible(currentParameters.isOverlapped());
        collapsiblePanel.getContentPane().add(panel, BorderLayout.NORTH);
        collapsiblePanel.setToolTipText("Customize parameters for FAG-EC (Optional)");
        this.add(collapsiblePanel);
  }
View Full Code Here


        decimal.setParseIntegerOnly(true);

        this.setLayout(new BorderLayout());
        this.setBorder(BorderFactory.createTitledBorder(""));
        //the collapsible panel
        CollapsiblePanel collapsiblePanel = new CollapsiblePanel("EAGLE Options");
        JPanel cliqueSizePanel=createCliqueSizePanel();
        JPanel complexSizePanel=createComplexSizePanel();
        collapsiblePanel.getContentPane().add(cliqueSizePanel, BorderLayout.NORTH);
        collapsiblePanel.getContentPane().add(complexSizePanel, BorderLayout.CENTER);
        collapsiblePanel.setToolTipText("Customize parameters for EAGLE (Optional)");
        this.add(collapsiblePanel);
  }
View Full Code Here

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