Package org.coode.owlapi.obo12.parser

Examples of org.coode.owlapi.obo12.parser.Token

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        // Literals
        final List<String> literals = new ArrayList<String>();

        // Get schema names and literals
        Token token;
        while ((token = parser.getNextToken()) != null && StringUtils.hasText(token.toString())) {
            if (token.kind == ParserConstants.STRING_LITERAL) {
                literals.add(token.toString().substring(1, token.toString().length() - 1));
            }

            if (token.kind == ParserConstants.IDENTIFIER) {
                identifiers.add(token.toString());
            }
        }

        // Sort literals in order to process later literals included into others
        Collections.sort(literals, new Comparator<String>() {
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        // Literals
        final List<String> literals = new ArrayList<String>();

        // Get schema names and literals
        Token token;
        while ((token = parser.getNextToken()) != null && StringUtils.isNotBlank(token.toString())) {
            if (token.kind == ParserConstants.STRING_LITERAL) {
                literals.add(token.toString().substring(1, token.toString().length() - 1));
            }

            if (token.kind == ParserConstants.IDENTIFIER) {
                identifiers.add(token.toString());
            }
        }

        // Sort literals in order to process later literals included into others
        Collections.sort(literals, new Comparator<String>() {
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        // Literals
        final List<String> literals = new ArrayList<String>();

        // Get schema names and literals
        Token token;
        while ((token = parser.getNextToken()) != null && StringUtils.hasText(token.toString())) {

            if (token.kind == ParserConstants.STRING_LITERAL) {
                literals.add(token.toString().substring(1, token.toString().length() - 1));
            }

            if (token.kind == ParserConstants.IDENTIFIER) {
                identifiers.add(token.toString());
            }
        }

        // Sort literals in order to process later literals included into others
        Collections.sort(literals, new Comparator<String>() {
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        // Literals
        final List<String> literals = new ArrayList<String>();

        // Get schema names and literals
        Token token;
        while ((token = parser.getNextToken()) != null && StringUtils.hasText(token.toString())) {

            if (token.kind == ParserConstants.STRING_LITERAL) {
                literals.add(token.toString().substring(1, token.toString().length() - 1));
            }

            if (token.kind == ParserConstants.IDENTIFIER) {
                identifiers.add(token.toString());
            }
        }

        // Sort literals in order to process later literals included into others
        Collections.sort(literals, new Comparator<String>() {
View Full Code Here
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        // Literals
        final List<String> literals = new ArrayList<String>();

        // Get schema names and literals
        Token token;
        while ((token = parser.getNextToken()) != null && StringUtils.hasText(token.toString())) {

            if (token.kind == ParserConstants.STRING_LITERAL) {
                literals.add(token.toString().substring(1, token.toString().length() - 1));
            }

            if (token.kind == ParserConstants.IDENTIFIER) {
                identifiers.add(token.toString());
            }
        }

        // Sort literals in order to process later literals included into others
        Collections.sort(literals, new Comparator<String>() {
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        // Literals
        final List<String> literals = new ArrayList<String>();

        // Get schema names and literals
        Token token;
        while ((token = parser.getNextToken()) != null && StringUtils.isNotBlank(token.toString())) {
            if (token.kind == ParserConstants.STRING_LITERAL) {
                literals.add(token.toString().substring(1, token.toString().length() - 1));
            }

            if (token.kind == ParserConstants.IDENTIFIER) {
                identifiers.add(token.toString());
            }
        }

        // Sort literals in order to process later literals included into others
        Collections.sort(literals, new Comparator<String>() {
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        assertEquals(19, m.getOntologyParsers().size());
        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/celltype.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);
    }
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        assertEquals(19, m.getOntologyParsers().size());
        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/behavior.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);
    }
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Related Classes of org.coode.owlapi.obo12.parser.Token

  • org.apache.syncope.core.persistence.dao.impl.AbstractAttributableDAOImpl
  • org.apache.syncope.core.persistence.dao.impl.AbstractSubjectDAOImpl
  • org.apache.syncope.core.persistence.dao.impl.UserDAOImpl
  • org.coode.owlapi.obo12.LoadCellTestCase
  • org.coode.owlapi.obo12.parser.OBO12DocumentFormat
  • org.semanticweb.owlapi.io.OWLOntologyDocumentSource
  • org.semanticweb.owlapi.io.StreamDocumentSource
  • org.semanticweb.owlapi.model.AddAxiom
  • org.semanticweb.owlapi.model.AddImport
  • org.semanticweb.owlapi.model.AddOntologyAnnotation
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