Examples of org.coode.owlapi.obo12.parser.IDSpaceManager

org.coode.owlapi.obo12.parser.OBO12DocumentFormat
Author: Matthew Horridge
Stanford University
Bio-Medical Informatics Research Group
Date: 18/04/2012
Maps between id prefixes and IRI prefixes. By default an IRI prefix is the value defined by {@link OBOPrefix#getPrefix()}, but this can be overridden using an idspace tag in the ontology header.

Note that the terminology used here, i.e. "id prefix" and "IRI prefix" is OBO terminology and is not related to the OWL notion of prefix name and prefix. "id prefix" is the substring before the colon in an OBO id. IRI prefix is the prefix of an IRI that is the result of translating an OBO id to an IRI.

        assertEquals(19, m.getOntologyParsers().size());
        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/celltype.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);
    }

View Full Code Here

        assertEquals(19, m.getOntologyParsers().size());
        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/behavior.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);
    }

View Full Code Here

TOP

Related Classes of org.coode.owlapi.obo12.parser.IDSpaceManager

org.coode.owlapi.obo12.LoadCellTestCase

org.coode.owlapi.obo12.parser.OBO12DocumentFormat

org.semanticweb.owlapi.io.OWLOntologyDocumentSource

org.semanticweb.owlapi.io.StreamDocumentSource

org.semanticweb.owlapi.model.AddAxiom

org.semanticweb.owlapi.model.AddImport

org.semanticweb.owlapi.model.AddOntologyAnnotation

org.semanticweb.owlapi.model.IRI

org.semanticweb.owlapi.model.OWLAnnotation

org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.