Examples of org.cipres.treebase.domain.study.ParsimonyAlgorithm

    algorithmMap.put(Constants.ALGORITHM_LIKELIHOOD, new LikelihoodAlgorithm());
    algorithmMap.put(Constants.ALGORITHM_OTHER, new OtherAlgorithm());
    // ParsimonyAlgorithm parsimonyAlgorithm = new ParsimonyAlgorithm();
    // parsimonyAlgorithm.setGapMode(new GapMode());
    // parsimonyAlgorithm.setPolyTCount(new PolyTCount());
    algorithmMap.put(Constants.ALGORITHM_PARSIMONY, new ParsimonyAlgorithm());
  }

      ContextManager.getAnalysisStepService().save(theAnalysisStep);
      
      Algorithm theAlgorithm;
      String tb1Algorithm = an.getString("algorithm");
      if (tb1Algorithm.equalsIgnoreCase("parsimony")) {
        theAlgorithm = new ParsimonyAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("bayesian")) {
        theAlgorithm = new BayesianAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("evolution")) {
        theAlgorithm = new EvolutionAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("joining")) {

Related Classes of org.cipres.treebase.domain.study.ParsimonyAlgorithm

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