Package org.cipres.treebase.domain.study

Examples of org.cipres.treebase.domain.study.BayesianAlgorithm

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  private List<AnalyzedDataCommand> analyzedDataCommandList = new ArrayList<AnalyzedDataCommand>();

  private List<String> mUniqueAlgorithmDescriptions;

  public AnalysisStepCommand() {
    algorithmMap.put(Constants.ALGORITHM_Bayesian, new BayesianAlgorithm());
    algorithmMap.put(Constants.ALGORITHM_Evolution, new EvolutionAlgorithm());
    algorithmMap.put(Constants.ALGORITHM_Joining, new JoiningAlgorithm());
    algorithmMap.put(Constants.ALGORITHM_UPGMA, new UPGMAAlgorithm());
    algorithmMap.put(Constants.ALGORITHM_LIKELIHOOD, new LikelihoodAlgorithm());
    algorithmMap.put(Constants.ALGORITHM_OTHER, new OtherAlgorithm());
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      Algorithm theAlgorithm;
      String tb1Algorithm = an.getString("algorithm");
      if (tb1Algorithm.equalsIgnoreCase("parsimony")) {
        theAlgorithm = new ParsimonyAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("bayesian")) {
        theAlgorithm = new BayesianAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("evolution")) {
        theAlgorithm = new EvolutionAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("joining")) {
        theAlgorithm = new JoiningAlgorithm();
      } else if (tb1Algorithm.equalsIgnoreCase("UPGMA")) {
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Related Classes of org.cipres.treebase.domain.study.BayesianAlgorithm

  • org.cipres.treebase.auxdata.CommitStudy
  • org.cipres.treebase.web.model.AnalysisStepCommand
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