Examples of org.cipres.treebase.domain.matrix.TypeSet

    for (int i = 0; i < pSetVector.size(); i++) {
      SpecsSet ss = (SpecsSet) pSetVector.elementAt(i);
      if (ss instanceof ParsimonyModelSet) {
        ParsimonyModelSet pmSet = (ParsimonyModelSet) ss;


        TypeSet typeSet = createTypeSet(pMesqMatrix, pmSet, pMatrix);


        if (pmSet == defaultModelSet) {
          foundDefault = true;
          pMatrix.setDefaultTypeSet(typeSet);
        }
        pMatrix.getTypeSets().add(typeSet);
      }
    }


    if (!foundDefault && defaultModelSet != null) {
      TypeSet typeSet = createTypeSet(pMesqMatrix, defaultModelSet, pMatrix);


      pMatrix.setDefaultTypeSet(typeSet);


      // Default typeset *is* in the above weight set collection.
      pMatrix.getTypeSets().add(typeSet);

  private TypeSet createTypeSet(
    CharacterData pMesqMatrix,
    ParsimonyModelSet pPmSet,
    CharacterMatrix pMatrix) {


    TypeSet typeSet = new TypeSet();
    // typeSet.setTitle(pPmSet.getName3());
    //
    // int numChars = pMesqMatrix.getNumChars();
    // Set<CharWeight> tbWeights = new HashSet<CharWeight>();
    //

Related Classes of org.cipres.treebase.domain.matrix.TypeSet

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