Examples of org.cipres.treebase.dao.jdbc.MatrixJDBC

org.cipres.treebase.dao.jdbc.MatrixJDBC
Helper class for direct Matrix related SQL operations. Bypass the hibernate framework for high performance database operations. Created on Jul 13, 2007 @author Jin Ruan

          LOGGER
            .debug("convertMatrices: matrix: " + data.getName() + " -" + data.getNumChars()); //$NON-NLS-1$
        }


        MesquiteMatrixConverter converter = getConverter(data, pDataTypeHome, pItemDefHome);
        MatrixJDBC matrixJDBC = converter.convertMatrix(data, pDataSet);


        CharacterMatrix m = matrixJDBC.getCharacterMatrix();
        m.setNexusFileName(pNexusFileName);
        pDataSet.getMatrices().add(m);


        // setup jdbc dataset for direct jdbc batch inserts:
        // pDataSet.getDataJDBC().addData(m, data, converter);

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   * 
   * @param pData
   * @return
   */
  private MatrixJDBC convertMatrix(CharacterData pMesqMatrix, NexusDataSet pDataSet) {
    MatrixJDBC matrixJDBC = createMatrix(pMesqMatrix);
    CharacterMatrix m = matrixJDBC.getCharacterMatrix();


    // matrix properties:
    m.setTitle(pMesqMatrix.getName());
    m.setMissingSymbol(pMesqMatrix.getUnassignedSymbol());
    m.setGapSymbol(pMesqMatrix.getInapplicableSymbol());

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Related Classes of org.cipres.treebase.dao.jdbc.MatrixJDBC

mesquite.lib.characters.CharacterData

org.cipres.treebase.domain.nexus.mesquite.MesquiteMatrixConverter

org.hibernate.Query

java.sql.PreparedStatement

org.springframework.jdbc.UncategorizedSQLException

java.sql.ResultSet

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