Package org.cipres.treebase.auxdata

Examples of org.cipres.treebase.auxdata.CompleteStudyAction


        die("File not found: " + logFileName);
      }
    }
     
    String actionName = opts.getOptWithDefault("a", "commitStudy");
    CompleteStudyAction action = (CompleteStudyAction) ContextManager.getBean(actionName + "Action");
    action.setDisabled(opts.getBoolOpt("n"));
    action.setIsForTesting(opts.getBoolOpt("t"));
    if (opts.hasOpt("s")) {
      action.setInterestingLegacyIDs(new HashSet());
     
      for (String legacyID : opts.getStringOpt("s").split(",\\s*"))
        action.getInterestingLegacyIDs().add(legacyID);
    }


    AuxiliaryDataParser parser = new AuxiliaryDataParser(action);

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